Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a05f
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 29 4.1
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 28 7.2
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 7.2
03_05_0801 - 27822214-27822732 28 7.2
12_01_0724 - 6377023-6379392 28 9.6
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 28 9.6
10_01_0133 + 1621574-1625779 28 9.6
06_01_0674 - 4921428-4923365 28 9.6
05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818 28 9.6
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 28 9.6
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 28 9.6
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 28 9.6
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 28 9.6
01_01_0088 + 688792-691441,691629-693013 28 9.6
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 252 RR*TRQGRPSPGSRGVPVRDRPPCRGRGRFNFRHSPVQKLGT 377
R+ + +GR + P +P RGRGR SP QK G+
Sbjct: 466 RKPSNRGRGRGAKKATP-EPKPSARGRGRPKKTESPAQKTGS 506
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = -2
Query: 339 TDPAPDKADGRE--LGHPYFPGSDGPDASTGGRRVP--HVDSLRAGCRSTSHNEAP 184
T APD DG E +G P SD D T G P H+D G + S P
Sbjct: 1039 TPGAPDPQDGPEATVGRPLLSSSDPEDIGTEGECAPRGHLDEECPGDAAPSKEGRP 1094
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 74 VEGAPRATRKGRPASDKKKEAGTPARERP 102
>03_05_0801 - 27822214-27822732
Length = 172
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = -3
Query: 287 SRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSFGAILPMLKPLALLVEL 120
S+A T T P G + L L+ LA+AA V + F P+L P ALL+ L
Sbjct: 34 SQALTVATLFPLGGLLLVLSG--LALAASVVGLAVATPVFLIFSPVLVPAALLIGL 87
>12_01_0724 - 6377023-6379392
Length = 789
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 423 VEGASRATRKGRPASDKKKEAGAPSRERP 451
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 106 VEGASRATRKGRPASDKKKEAGAPSRERP 134
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 ATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 408
A + +VG GG+G T T + R HF+V+IW
Sbjct: 221 AVLPVVGPGGIGKTTFTQHLFHDQRVKKHFHVRIW 255
>06_01_0674 - 4921428-4923365
Length = 645
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 280 VEGASRATRKGRPASDKKKEAGAPSRERP 308
>05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818
Length = 839
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 211 VEGASRATRKGRPASDKKKEAGAPSRERP 239
>05_03_0294 +
11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 280 VEGASRATRKGRPASDKKKEAGAPSRERP 308
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 442 VEGASRATRKGRPASDKKKEAGAPSRERP 470
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 442 VEGASRATRKGRPASDKKKEAGAPSRERP 470
>01_06_1164 -
35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 240 VHGARR*TRQGRPSPGSR---GVPVRDRP 317
V GA R TR+GRP+ + G P R+RP
Sbjct: 442 VEGASRATRKGRPASDKKKEAGAPSRERP 470
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 319 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 408
+VG GGVG T N R HF V IW
Sbjct: 257 IVGPGGVGKTTFAQHLYNDHRTKQHFTVMIW 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,845,127
Number of Sequences: 37544
Number of extensions: 347312
Number of successful extensions: 956
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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