Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a05f
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   3.7  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   3.7  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 312 GRELGHPYFPGSDGPDASTG 253
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 312 GRELGHPYFPGSDGPDASTG 253
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 312 GRELGHPYFPGSDGPDASTG 253
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 387 SLQCTNLGTLRLICPPVKHMC 449
           + +CT++G+++L CP V  +C
Sbjct: 426 NFECTSIGSMQLCCPTVASVC 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,091
Number of Sequences: 27780
Number of extensions: 292727
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)