Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a03r
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    36   0.057
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    31   1.6  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    30   2.8  
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634...    29   5.0  
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    29   6.6  
05_04_0452 - 21373876-21375531                                         29   6.6  
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269...    29   6.6  
05_07_0199 + 28365335-28365603,28367687-28368554                       28   8.7  
04_04_1055 + 30444235-30446649                                         28   8.7  

>01_06_0102 -
           26447286-26448107,26448248-26448385,26448990-26449359,
           26449505-26449606,26449696-26449788,26449934-26450181,
           26451088-26451274,26451825-26452043,26452464-26452660,
           26453545-26453875,26454099-26454457,26455141-26455240,
           26455349-26455464,26455547-26455663,26455782-26455880,
           26456057-26456131,26456205-26456286,26457724-26457763,
           26458685-26458769,26458924-26459055
          Length = 1303

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 629 QELRRTHRVCQRSWSSLDEWCYSRGPELGILACCRQPDLRPQLRHPDYA 483
           +E+RR   V + +  S+  WC+ R P L IL C +   +   + HP Y+
Sbjct: 210 KEIRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIW-AIEHPTYS 257


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +2

Query: 236 LVVVKIFEIYSRDTIEPVMERSRTNETSWETRVTTEFAASNKGGHTDQN-RYTLRIHVDE 412
           L+ +  + +  +  ++ + E +   ET+    +  EF A +     DQN    +++ V+ 
Sbjct: 372 LIPLPSYPVLEKLPVKVLPEMNEMKETN-HAHLQAEFLAPDDCTAGDQNYALPIKVEVES 430

Query: 413 WTAAVTLASRL*RHIEESGADRIRRNQGAEVE 508
           W A +       + I +SG D  RR +  + E
Sbjct: 431 WVADIRKKEAAMQTITDSGEDNSRRPRSGDSE 462


>09_06_0147 +
           21195222-21195377,21195471-21195522,21196842-21204362,
           21204453-21205031,21205176-21205484,21205638-21205718,
           21205971-21206279,21207430-21207816,21207964-21208767,
           21208856-21209218,21209437-21209667,21209934-21210278,
           21210494-21210712,21210759-21210815,21210978-21211322,
           21211538-21211756,21211803-21211859,21212022-21212366,
           21212584-21212814,21213100-21213458
          Length = 4322

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 536 QVYPVQDLGSSTIRPETTMTAGIHGESVVVPEGISRRLHTN 658
           Q YP QD    +IRP       + G+ V  PEG ++  HT+
Sbjct: 488 QQYPSQDSEQVSIRPVAQEPLSMDGQLVQGPEGTAQTPHTD 528


>02_04_0123 +
           19961904-19962096,19962836-19963029,19963334-19963465,
           19963921-19964038,19964248-19964484,19964576-19964658,
           19964777-19965004,19965394-19965470,19965590-19965626,
           19965786-19965952,19966156-19966234,19966301-19966378,
           19967459-19967575,19967999-19968379,19968453-19968590,
           19968680-19968769,19968832-19968840
          Length = 785

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 441 LLARVTAAVHSSTWILRVYRF*SV*PPLLLAANSVVTLVSQLVSFV 304
           +L    A V SS+   R++ F  + PPLL   +     V+QL+ F+
Sbjct: 32  MLRDAAADVVSSSTATRIHLFREILPPLLSRGSDSALFVAQLIRFI 77


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 859 AHCVAGRITVVIRAGVTNLTTPEYISEST 773
           A  V GR+ V +  G  ++T+P YISE++
Sbjct: 120 AQLVVGRVFVGLGVGTASMTSPLYISEAS 148


>05_04_0452 - 21373876-21375531
          Length = 551

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 365 GHTDQNRYT--LRIHVDEWTAAVTLASRL*RHIEESGADRIRRNQGAEVEGASRVGDSTQ 538
           GH   +R+T    +     TAA+ L  ++  H+  SG D     Q + +E  +R GD   
Sbjct: 113 GHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLAL 172

Query: 539 VYPVQD 556
            + V D
Sbjct: 173 AHKVFD 178


>01_06_0807 +
           32125987-32126029,32126030-32126208,32126760-32126943,
           32127714-32127788,32128079-32128188,32128747-32128965,
           32129124-32129279,32129759-32129911,32130223-32130349,
           32131598-32131728,32131858-32132139
          Length = 552

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 26/90 (28%), Positives = 37/90 (41%)
 Frame = -2

Query: 706 LLRLHRPVVFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAV 527
           LL L   VVF+R L P+  +S+    R       Y   H    +NG  PE     YLRA+
Sbjct: 20  LLLLLPHVVFSRPLFPLPSKSNGIEKRPLQTFRPYNIAHRG--SNGEIPEETAAAYLRAI 77

Query: 526 ANPTCALNFGTLITPNAICARFFNVTSQST 437
                 +    L + +     F +VT  +T
Sbjct: 78  EEGADFIETDILASKDGALICFHDVTLDAT 107


>05_07_0199 + 28365335-28365603,28367687-28368554
          Length = 378

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 434 ASRL*RHIEESGADRIRRNQGAEVEGAS 517
           A+++ +  +E G DRIR + G  +EGAS
Sbjct: 286 AAKILQWFKEEGQDRIRAHSGPRMEGAS 313


>04_04_1055 + 30444235-30446649
          Length = 804

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 519 RLAPSTSAP*LRRMRSAPDSSM*RHSLLARVTAAV 415
           RL  S  A  LRR RS PD+++ R+SLL    ++V
Sbjct: 122 RLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSV 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,998,588
Number of Sequences: 37544
Number of extensions: 502830
Number of successful extensions: 1517
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)