Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a03f
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 36 0.047
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 32 0.44
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 2.3
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 29 4.1
02_01_0100 + 743467-744868,745066-745127 29 4.1
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 5.4
05_04_0452 - 21373876-21375531 29 5.4
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 29 5.4
05_07_0199 + 28365335-28365603,28367687-28368554 28 7.2
04_04_1055 + 30444235-30446649 28 7.2
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 28 9.5
12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896 28 9.5
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 28 9.5
02_01_0752 - 5583757-5584092 28 9.5
01_06_0128 - 26727484-26728383 28 9.5
01_06_0049 - 25953811-25954131,25954223-25954903 28 9.5
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 495 QELRRTHRVCQRSWSSLDEWCYSRGPELGILACCRQPDLRPQLRHPDYA 641
+E+RR V + + S+ WC+ R P L IL C + + + HP Y+
Sbjct: 210 KEIRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIW-AIEHPTYS 257
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3
Query: 294 HRDASGNTVSCSDHPLPVDDRATASKHSAGWIHHAEGGVVGVLTGSR 154
H+ A P P DDRAT+ H HH GG G G R
Sbjct: 70 HKPARRGGAGADHSPSPRDDRATSWDHGRHHHHHNSGGRRGSFGGRR 116
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 588 QVYPVQDLGSSTIRPETTMTAGIHGESVVVPEGISRRLHTN 466
Q YP QD +IRP + G+ V PEG ++ HT+
Sbjct: 488 QQYPSQDSEQVSIRPVAQEPLSMDGQLVQGPEGTAQTPHTD 528
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = -3
Query: 291 RDASGNTVSCSDHPLPVDDRATASKHSAGWIHHAEGGVVG----VLTGSRL--PTRYNTE 130
+D G + H +P++ +++ SK W+++A VV L +R+ P Y+
Sbjct: 356 QDLKGINPALCTHRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYSEW 415
Query: 129 ICGIYIFVDIFNEV 88
C + IF D+ E+
Sbjct: 416 RCMMSIFSDMIEEI 429
>02_01_0100 + 743467-744868,745066-745127
Length = 487
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 252 PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFV 106
PLP DD ATA S W++ + V S T ++T G+ I V
Sbjct: 25 PLPADDDATAGV-SPSWVYLEDRAYVSPDAVSNSTTAFSTTTTGVSIHV 72
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 265 AHCVAGRITVVIRAGVTNLTTPEYISEST 351
A V GR+ V + G ++T+P YISE++
Sbjct: 120 AQLVVGRVFVGLGVGTASMTSPLYISEAS 148
>05_04_0452 - 21373876-21375531
Length = 551
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 759 GHTDQNRYT--LRIHVDEWTAAVTLASRL*RHIEESGADRIRRNQGAEVEGASRVGDSTQ 586
GH +R+T + TAA+ L ++ H+ SG D Q + +E +R GD
Sbjct: 113 GHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLAL 172
Query: 585 VYPVQD 568
+ V D
Sbjct: 173 AHKVFD 178
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/90 (28%), Positives = 37/90 (41%)
Frame = +1
Query: 418 LLRLHRPVVFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAV 597
LL L VVF+R L P+ +S+ R Y H +NG PE YLRA+
Sbjct: 20 LLLLLPHVVFSRPLFPLPSKSNGIEKRPLQTFRPYNIAHRG--SNGEIPEETAAAYLRAI 77
Query: 598 ANPTCALNFGTLITPNAICARFFNVTSQST 687
+ L + + F +VT +T
Sbjct: 78 EEGADFIETDILASKDGALICFHDVTLDAT 107
>05_07_0199 + 28365335-28365603,28367687-28368554
Length = 378
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 690 ASRL*RHIEESGADRIRRNQGAEVEGAS 607
A+++ + +E G DRIR + G +EGAS
Sbjct: 286 AAKILQWFKEEGQDRIRAHSGPRMEGAS 313
>04_04_1055 + 30444235-30446649
Length = 804
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 605 RLAPSTSAP*LRRMRSAPDSSM*RHSLLARVTAAV 709
RL S A LRR RS PD+++ R+SLL ++V
Sbjct: 122 RLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSV 156
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 301 E*PP*CVRQ-HSELQ*SPTPCGR*SHRKQTLRRLDPPCGGRRGGGADRESPPNQIQ 137
E PP VRQ S +Q P G+ H + ++ + PCG GG SPP ++
Sbjct: 395 EPPPLSVRQSQSAIQGQPPRQGQAPHNLEKVQ--NRPCGQSCDGGRRSASPPQGVR 448
>12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896
Length = 231
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 660 SGADRIRRNQGAEVEGASRVG-DSTQVYPVQDLGSSTIRPETTMTAGIHG 514
SG + RR+ E AS G DST++ PV ++T+R G G
Sbjct: 8 SGGMQRRRSLWQAAEAASGAGGDSTRIRPVPSTRATTVRGSVDSDCGTGG 57
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 237 RPQGVGDHCSSLCCRTHHGGHSRRRYELDHSGIHFGIDRMVQL 365
R G G +S+ C HH G SR RY L S H D +Q+
Sbjct: 529 RTNGDGVDSTSMRCE-HHDGVSRHRYSL--SPFHCPFDHEIQV 568
>02_01_0752 - 5583757-5584092
Length = 111
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 218 NTPPVGSTMRRAAWWG 171
N PP G +RA WWG
Sbjct: 3 NVPPAGGRRQRAWWWG 18
>01_06_0128 - 26727484-26728383
Length = 299
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 202 DPPCGGRRGGGADRESPPNQI 140
D CGGRR G RE PP Q+
Sbjct: 23 DEGCGGRRVGSMVRELPPAQM 43
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 606 DLRPQLRHPDYAECDLRQILQCDVTVY 686
+LRP +RHP Y R +L DV Y
Sbjct: 287 ELRPVIRHPRYKTAVCRMVLAGDVCPY 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,576,307
Number of Sequences: 37544
Number of extensions: 625363
Number of successful extensions: 2152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -