Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a03f
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 64 1e-10
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 51 1e-06
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 47 1e-05
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 35 0.056
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 33 0.17
AC199169-4|ABO33250.1| 275|Caenorhabditis elegans Hypothetical ... 32 0.40
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 32 0.52
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 6.4
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 64.1 bits (149), Expect = 1e-10
Identities = 67/220 (30%), Positives = 96/220 (43%), Gaps = 9/220 (4%)
Frame = +1
Query: 133 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAG--RIT---VV 297
R+V G+E PG P AALR + CG SI+ + +ITAAHC R++ VV
Sbjct: 26 RVVGGFETVPGAFPWTAALR--NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVV 83
Query: 298 IRAGVTNLTTP-EYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRP-VVFTRYLQPIR 471
+ N T E I + YP Y D + +DI++L + P + F Y QPI
Sbjct: 84 VGDWDNNQTDGNEQIFYLQRIHFYPLYKD-----IFSHDIAILEIPYPGIEFNEYAQPIC 138
Query: 472 VQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTC--ALNFGTLITPN 645
+ S + G SG G + A E L + + C + + ++ +
Sbjct: 139 LPSKDFVYT--PGRQCVVSGWGSMGLRYA--ERLQAALIPIINRFDCVNSSQIYSSMSRS 194
Query: 646 AICARFFNVTSQSTCQGDSGGPLVHVDPQGVPILIGVTSF 765
A CA + S CQGDSGGP G +L GV S+
Sbjct: 195 AFCAGYLEGGIDS-CQGDSGGPFACRREDGAFVLAGVISW 233
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 50.8 bits (116), Expect = 1e-06
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 10/212 (4%)
Frame = +1
Query: 112 DVDTTNLRIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVA---G 282
D T + R++ G E++P P ++++ G CGGS++ +V+TAAHC A
Sbjct: 50 DYVTLDHRLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRR 106
Query: 283 RITVVIRAG--VTNLTTPEYISEST--EWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFT 450
+ +R G + +P ++ + WYN D +++R+H PV +
Sbjct: 107 PTSYSVRVGGHRSGSGSPHRVTAVSIHPWYNI--------GFPSSYDFAIMRIHPPVNTS 158
Query: 451 RYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTCAL--NF 624
+PI + S A N L V + + + L +++ ++ C+ N+
Sbjct: 159 TTARPICL-PSLPAVEN--RLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNY 215
Query: 625 -GTLITPNAICARFFNVTSQSTCQGDSGGPLV 717
G + P+ +CA ++ +CQGDSGGPL+
Sbjct: 216 IGRIHLPSMLCAG-YSYGKIDSCQGDSGGPLM 246
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 47.2 bits (107), Expect = 1e-05
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 14/229 (6%)
Frame = +1
Query: 127 NLRIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHC---VAGRITVV 297
+ RI+ G G + A L G CG +++ W++TAAHC + R V
Sbjct: 35 SFRIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVY 93
Query: 298 IRAGVTNLTTPEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQ 477
+R N + E+ Y + Y+ N NDI+LLR+ + V
Sbjct: 94 VREPKNNRERSFSVKEA---YIHSGYN----NQTADNDIALLRISSDLSKLGIKPVCLVH 146
Query: 478 SSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPT-----CALNFGTL--- 633
+ + Y V G + P+++N L++ + P C + L
Sbjct: 147 DDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLL 206
Query: 634 ---ITPNAICARFFNVTSQSTCQGDSGGPLVHVDPQGVPILIGVTSFVA 771
IT ICA + T GDSGGPL+ G + IG+TS+ A
Sbjct: 207 SVKITGYQICAGAY---LHGTAPGDSGGPLLIHKSNGEYVQIGITSYGA 252
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 35.1 bits (77), Expect = 0.056
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 649 ICARFFNVTSQS---TCQGDSGGPLVHVDPQ-GVPILIGVTSF 765
ICA NV++ S TC GDSGG L + D G LI +TSF
Sbjct: 219 ICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSF 261
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 520 YASGHGRLWTNGATPEVLNWVYLRAVANPTCALNFGTLITPNAICARFFNVTSQSTCQGD 699
+ S G+ + N A P ++ + L TC N+GT I ++ C ++ C GD
Sbjct: 217 WGSDPGKGFDNAAFP-MIQVLTLATETLATCEENWGTSIPFDSFCTA--EEEDKNVCSGD 273
Query: 700 SGGPLV-HVDPQGVPILIGVTSF 765
SGG L H +I + S+
Sbjct: 274 SGGGLTFHQSDSAREFIIAIVSY 296
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 223 CGGSIVHREWVITAAHCVAGRITVVIRAGVTNLTTPEYISESTEWYN 363
CGG+++ + V+TAAHC G N + Y ES YN
Sbjct: 62 CGGTLITLKHVLTAAHCFQKHFGAKKEGGEENSMSGRY-CESWVIYN 107
>AC199169-4|ABO33250.1| 275|Caenorhabditis elegans Hypothetical
protein F38A1.10 protein.
Length = 275
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/100 (23%), Positives = 40/100 (40%)
Frame = +1
Query: 442 VFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTCALN 621
V + YL + Q +++ +Y T + S +G W + + +WV+ NP N
Sbjct: 54 VISSYLAYVPDQYTSNFLASY-ARTAFRSANGIFWIGLSRNNISSWVWDNG--NPVTYTN 110
Query: 622 FGTLITPNAICARFFNVTSQSTCQGDSGGPLVHVDPQGVP 741
FGT + N + N + + D + DP P
Sbjct: 111 FGTQLGQNYVAESSANSKWSTFGENDKNFFVCSYDPAAPP 150
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 31.9 bits (69), Expect = 0.52
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 136 IVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAGRITVVIRAGVT 315
I++G+ A A++ P G CGG ++ VIT+AHCV + A VT
Sbjct: 17 IINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVT 76
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 669 IEESGAD--RIRRNQGAEVEGASRVGDSTQVYPVQDLGSSTIRPETTMTAGIHGES 508
+E SG+D + + E+EG S GD +D+ ST +P + G +GE+
Sbjct: 1178 LEISGSDLTKATKKPHVEIEG-SGTGDEEITATTRDVSKSTKKPRVEVDGGDNGET 1232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,271,231
Number of Sequences: 27780
Number of extensions: 470120
Number of successful extensions: 1441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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