Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a03f
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    68   8e-14
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.084
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.3  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 68.1 bits (159), Expect = 8e-14
 Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 10/223 (4%)
 Frame = +1

Query: 133 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAGRITVVIRAGV 312
           RIV G      + P  A ++     G +  CG +I+ + +V+TAAHC+    T  +   V
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIVV 217

Query: 313 -------TNLTTPEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQP-- 465
                     T    +    +   +P YD    +  Q NDI+LL+  + + F   + P  
Sbjct: 218 GEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPAC 277

Query: 466 IRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTCALNFGTLITPN 645
           +  Q   D+F   D +TV   GH     NG    +L    L  +    C   +G ++  N
Sbjct: 278 LPFQHFLDSFAGSD-VTVLGWGHTSF--NGMLSHILQKTTLNMLTQVECYKYYGNIMV-N 333

Query: 646 AICARFFNVTSQSTCQGDSGGPLVHVDPQGVPIL-IGVTSFVA 771
           A+CA       +  CQ DSGGP++  +P+   ++ IG+ S+ A
Sbjct: 334 AMCA---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGA 373


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.084
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 138 NTEICGIYIFVDIFNEVGLDFLGKALPTKHK 46
           N E+CGIY   +   ++ ++F+   +P +H+
Sbjct: 88  NEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 513 HRVCQRSWSSLDEWCYSR 566
           H+ C R W  +   C SR
Sbjct: 18  HQRCSRDWFRISAGCVSR 35


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 747 DRCDLLCC 770
           D CDL+CC
Sbjct: 111 DGCDLMCC 118


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 747 DRCDLLCC 770
           D CDL+CC
Sbjct: 112 DGCDLMCC 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,520
Number of Sequences: 438
Number of extensions: 5796
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)