Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a02r
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 50 5e-07
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 46 1e-05
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 27 2.8
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 3.7
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 27 4.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 26 6.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 8.6
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy... 26 8.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 8.6
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 50.0 bits (114), Expect = 5e-07
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 22/178 (12%)
Frame = -3
Query: 553 GIFKGRKALVSAGTWVKDLLPN--LPISPVRKVLTWYASDPCYKNIPGFLVN-LEQDF-- 389
G + K + + G W LLPN + + + P + FL N + DF
Sbjct: 194 GAYMAEKLIFATGAWTASLLPNDHTRFLATGQPVAYIKLTP--EEYIRFLTNPVYLDFDT 251
Query: 388 -FYGFPADENGF-KIAKHSGG----QNISS---------RDELTPFGSREGDRTETLNFI 254
FY FP +G+ K A+H G QN+ S + ++P +E + N
Sbjct: 252 GFYIFPPTPDGYLKFARHGYGFTRMQNLKSGKVESVPPKKPLVSPILPKEAELDLRRNLQ 311
Query: 253 TNFLPNTGG--ILEGKTCSYDMSPDEDFIIDTLPGSENVMLVTGLSGHGFKFTSVLGE 86
+ + + C Y + D +F+ D P EN+ + TG SGHGFKF +LG+
Sbjct: 312 RTYGEEISQRPFYKTRICYYTDTADAEFVFDYHPDYENLFVCTGGSGHGFKFFPILGK 369
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = -3
Query: 259 FITNFLPNTG--GILEGKTCSYDMSPDEDFIIDTLPGSENVMLVTGLSGHGFKFTSVLGE 86
F+ FLP+ ++ K C + D +F+ID +P +NV + G SGH FKF +G
Sbjct: 325 FLDTFLPDLADRSLINTKMCWISDTEDANFLIDKVPQFDNVFVANGDSGHAFKFLPNIGR 384
Query: 85 -IAAFFAGD 62
IA GD
Sbjct: 385 YIAQRILGD 393
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 529 LVSAGTWVKDLLPNLPISPVR 467
+V+AG W L+PNL IS R
Sbjct: 207 IVAAGPWTPQLIPNLRISGAR 227
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 325 ISSRDELTPFGSREGDRTETLNFITNFLPNTGGILEGKTCS-YDMSPDEDFIIDTLPGSE 149
I+ DE+ F S GD T ++ NFL + E ++ YD+SP E+ +++T+ G E
Sbjct: 99 ITPGDEV--FFSASGDAT--IHLSGNFLVDEEDEEEEESDEDYDLSPTEEDLVETVSGDE 154
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 235 TGGILEGKTCSYDMSPDEDFIIDTLPGSENVMLV-TGL 125
TGG + TCS + DE I L NV LV TGL
Sbjct: 464 TGGFIVYSTCSITVDEDEAVIQYALKKRPNVKLVSTGL 501
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 728 LNAVPTFLYILSRHILNLQSVDLSASASV 814
+++VP +L I S H+L L VDL V
Sbjct: 132 ISSVPIYLRIYSPHVLTLTLVDLPGLTKV 160
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 820 IDNARRSAEIYGLEIENMTAEDIKKRWNGIQVPGD 716
+D RRS + LE+EN++++ ++ +G P +
Sbjct: 849 LDAERRSKKAIQLELENLSSQAFRRNLSGSSSPSE 883
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 140 HNVLRTRQGVDDEVFVRTHVVAASLALQNPASVRQEVRYKIQRL 271
H L+T Q D ++++R HV L N V E+R I+++
Sbjct: 1485 HAGLQTNQ--DLKIYLRRHVFEMICTLYNSCVVNSEIRTLIEKI 1526
>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 668 SCKCLRQAIKGSWGSSNIRLQSLV 597
SC C + ++G WG + SLV
Sbjct: 311 SCPCCKTELEGGWGITRAYFNSLV 334
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 233 WRDFGGQDLQLRHESGRRLHHRH 165
W DFG ++L+L + G + H
Sbjct: 1846 WLDFGAEELRLSKDDGEKYFREH 1868
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,435
Number of Sequences: 5004
Number of extensions: 75006
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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