Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a02r
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical pr...    69   5e-12
U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical pr...    50   2e-06
U39645-7|AAA80364.1|  190|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U97000-6|AAC47992.2|  134|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    29   4.7  
L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical p...    29   6.2  

>U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical
           protein C15B12.1 protein.
          Length = 384

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 70/285 (24%), Positives = 118/285 (41%), Gaps = 17/285 (5%)
 Frame = -3

Query: 820 IDNARRSAEIYGLEIENMTAEDIKKRWNGIQVPGDYVGVFEPDAGFLRSELAVNAYVKLS 641
           ++    + ++ G++ E +   ++ KR+   +    + G+ +P  G + ++  +NA+    
Sbjct: 98  VEKIHTNLKLKGIKHEVIKGTEVGKRYPQFKFDDSWNGLIDPMGGVIYADKWLNAFRDEF 157

Query: 640 KEAGAHQIFDCK-VSSXXXXXXXXXXXXEKGIFKGRKALVSAGTWVKDLLPNLP--ISPV 470
           K+ G   I D + V S             K  +  +K + + G W+   LP+L   I P+
Sbjct: 158 KKIGGI-IHDREIVLSHSEISNNLFVTTNKSRYSSKKIIFTVGCWITKFLPDLKFNIEPI 216

Query: 469 R-KVLTWYA---SDPCYKNIPGFLVNLEQD-----FFYGFPADE--NGFKIAKHSGGQNI 323
              V  W     SD    N   + V + Q+     F Y  P  +     K   H G  + 
Sbjct: 217 SISVCYWKTKNESDSHLLNEDHYPVVIAQEMDLQVFHYSLPDTDYPGSMKFCYHFG--DA 274

Query: 322 SSRDELTPFGSREGDRTETLNFITNFLPNTGGILEGKT--CSYDMSPDEDFIIDTLPGSE 149
            ++D   P    +        FI  ++P   G    +   C Y  SPD+ +II T+P   
Sbjct: 275 LTQDLAHPAQRSQRCIDLPAKFIQKYMPVVDGSAPTRIDKCIYTNSPDDHYIIGTIPTKN 334

Query: 148 NVMLVTGL-SGHGFKFTSVLGEIAAFFAGDKKPGFDIRPFALNRF 17
             +LV G  SG GFK    +G+  A  A  KK   D+  F+ NRF
Sbjct: 335 PNILVGGCGSGSGFKVAPGIGKALAEMAAGKKTTVDVSFFSANRF 379


>U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical
           protein C15B12.8 protein.
          Length = 385

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
 Frame = -3

Query: 553 GIFKGRKALVSAGTWVKDLLPNL--PISPVR-KVLTWYASDPCY------KNIPGFLV-N 404
           G +K  K + + G W+    PN+   I P+   V  W A D         K+ P  +  N
Sbjct: 189 GEYKTNKIIFTVGCWITKFFPNVNFQIKPISLAVCYWNAKDEKNNHLLDEKHFPVVIAKN 248

Query: 403 LEQ-DFFYGFP-ADENGFKIAKHSGGQNISSRDELTPFGSREGDRTETLNFITNFLPNTG 230
           LE+ ++F+  P  D  G        G +++  D   P  + +   T   +FI + +P   
Sbjct: 249 LEKKEYFFALPDTDYPGAIKLVLDEGDDLAG-DLSHPTKNNQELVTIPGSFIKDHIPVID 307

Query: 229 GILEGKT--CSYDMSPDEDFIIDTLPGSENVMLVTGL-SGHGFKFTSVLGEIAAFFAGDK 59
           G    K   C Y  SPD  ++I  +    + +LV G  SG GFK    +G   A  A  K
Sbjct: 308 GSSPYKVDQCKYTNSPDHHYLIGPVSSENSKILVGGCGSGSGFKTAPGIGRSLAEMAAGK 367

Query: 58  KPGFDIRPFALNRF 17
               D+  F+ +RF
Sbjct: 368 STTVDVTFFSPSRF 381


>U39645-7|AAA80364.1|  190|Caenorhabditis elegans Hypothetical
           protein C14F11.6 protein.
          Length = 190

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -3

Query: 802 SAEIYGLEIENMTAEDIKKRWNGIQVPGDYVGVFEPDAGFLRSELAVNAYVKLSKEAGAH 623
           S EI+ + ++         +W+G+ + GD    F   AGFL      + +  LSKE GAH
Sbjct: 87  SGEIFDVAVDIRKDSPTYGKWHGVVLNGDNKHAFWIPAGFL------HGFQVLSKE-GAH 139

Query: 622 QIFDC 608
             + C
Sbjct: 140 VTYKC 144


>U97000-6|AAC47992.2|  134|Caenorhabditis elegans Hypothetical
           protein F21F8.2 protein.
          Length = 134

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = -3

Query: 202 YDMSPDEDFIIDTLPGSENVMLVTGLSGHGFKFTSVLGEI 83
           Y + P+ +++ID   G + ++ ++GLSG+G   T +LG +
Sbjct: 72  YVVEPN-NYVIDINQGDKCLLAISGLSGYGMGPTWILGTL 110


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 424 IPGFLVNLEQDFFYGFPADENGFKIAKHSGGQNISSRDELTP 299
           IPG LVN  + FF G PA   G+      G    ++R ++ P
Sbjct: 5   IPGSLVNKTKKFFMGMPA-PTGYVPGVGRGATGFTTRSDIGP 45


>L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical
           protein C02F5.4 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +2

Query: 107 FKTVAAQTGH*HNVLRTRQGVDDEVFVRTHVVAASLA-LQNPASVRQEVRYKIQRLSSVS 283
           F T A        V +  Q V +E       V  SL  LQNP S  +E+R ++ +    +
Sbjct: 140 FPTPAVANKEHGKVAQPSQFVVEEAKKNAQDVLLSLKRLQNPPSTEREIRTELSKYPD-N 198

Query: 284 FATPKWGQFVPRTDILTSAVLRNFKAVFICRETVKEI 394
            + P+  Q V  +    S +++N +A+ +  E VK +
Sbjct: 199 ISCPEKLQSVRSSQEAQSLLVQNEEALPMLEEYVKRL 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,586,817
Number of Sequences: 27780
Number of extensions: 421538
Number of successful extensions: 1140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)