Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a02f
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 36 0.006
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 29 0.96
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 28 1.7
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 27 2.2
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 27 3.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 26 5.1
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 5.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 5.1
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy... 26 6.7
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 8.9
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 35.9 bits (79), Expect = 0.006
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 7/171 (4%)
Frame = +1
Query: 238 ATRLVRCAYGEGTRYIPLLIRARELWKELNELTKTNIYEKCGVLNTGLGDSSFIDNARRS 417
A R++R Y + Y + I A E W+ N L K Y G++ G + + D + +
Sbjct: 49 ANRIIRSDYADAV-YCSMGIDALEEWRT-NPLFKEQFYGS-GLMFVGRDNVEYRDMSLEN 105
Query: 418 AEIYGLEIENM-TAEDIKK---RWNGIQVPGDYVGVFEPDAGFLRSELAVNAYVKLSKEA 585
G+ T E+++K +W G G+ G +G+ +E +V + V A
Sbjct: 106 LTKMGVSAAKFQTTEELRKLFPKWIGELNDGE-AGYANFSSGWANAEQSVKSVVNYLAHA 164
Query: 586 GAHQIFDCKVSSXXXXXXXXXXXXXK---GIFKGRKALVSAGTWVKDLLPN 729
G I + + + G + K + + G W LLPN
Sbjct: 165 GVSFISGPEGTVEELITEENVVKGVRTTTGAYMAEKLIFATGAWTASLLPN 215
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 28.7 bits (61), Expect = 0.96
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +1
Query: 238 ATRLVRCAYGEGTRYIPLLIRARELWKEL-----NELTKTNIYEKCGVLNTGLGDSSFID 402
A +LV + EG+RY + + + +K L ++LTK++ V N LGD F
Sbjct: 77 ANQLVGIEHVEGSRYALIFLSEKLDFKSLKVIANHQLTKSS-KSLSNVSNKPLGDQLFRS 135
Query: 403 NARRSAEIYGLEIENMTAEDIKKRWNGIQVPGDYV 507
N+ S + E+ + ++ + Q P +V
Sbjct: 136 NSLMSPSLLKKELHRIQSDASQANERESQAPHSFV 170
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 284 MYLVPSP*AHRTSLVAPWWLPELCGGVCSSSISTFNP 174
M+L+ A +L PWWLP + S+S+F P
Sbjct: 258 MFLIWGVVAIAQALSIPWWLPAVASKEHRKSLSSFIP 294
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 688 LVSAGTWVKDLLPNLPISPVR 750
+V+AG W L+PNL IS R
Sbjct: 207 IVAAGPWTPQLIPNLRISGAR 227
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 262 YGEGTRYIPLLIRARELWKELNELTKTNIYEKCGVLNTGLGDSSFIDNARRSAE 423
YG T +IP+L R ++L + K CG++ T S +D A + +
Sbjct: 24 YGRDTAFIPVLRHKRVHEEQLRDKLKNVRKTYCGLIVTSQRVSETLDEALKQED 77
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 391 SFIDNARRSAEIYGLEIENMTAEDIKKRWNGIQVPGD 501
+ +D RRS + LE+EN++++ ++ +G P +
Sbjct: 847 NLLDAERRSKKAIQLELENLSSQAFRRNLSGSSSPSE 883
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 489 LNAVPTFLYILSRHILNLQSVDLSASASV 403
+++VP +L I S H+L L VDL V
Sbjct: 132 ISSVPIYLRIYSPHVLTLTLVDLPGLTKV 160
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -2
Query: 468 LYILSRHILNLQSVDLS--ASASVINKTRIP*TRVQNSTLLVNVCLCQFIQL 319
LY+L+ +L SV LS +SA+V + T + + T+ +NVCLC F +
Sbjct: 5 LYVLASLVLFGLSVLLSLYSSANVYSATVMISQSPVHITIGLNVCLCLFFAI 56
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 339 LCQFIQLLPEFSGSYQERNVSGAFA 265
+ F ++LPEFS SY E + A A
Sbjct: 1291 MIDFFKVLPEFSSSYVEPTIKCALA 1315
>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 549 SCKCLRQAIKGSWGSSNIRLQSLV 620
SC C + ++G WG + SLV
Sbjct: 311 SCPCCKTELEGGWGITRAYFNSLV 334
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 493 PGDYVGVFEPDAGFLRSELAVNAYVKLSKEAGAHQIF 603
PGD VF P FL+S L+ K KE A F
Sbjct: 180 PGDRFRVFSPVNAFLQSPLSNEQKKKRDKETRAMASF 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,614
Number of Sequences: 5004
Number of extensions: 56335
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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