Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a02f
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical pr...    49   4e-06
U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical pr...    40   0.002
U39645-7|AAA80364.1|  190|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical
           protein C15B12.1 protein.
          Length = 384

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 41/209 (19%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
 Frame = +1

Query: 109 YDLIIXXXXXXXXXXXXXXXXXXLKVLMLDEHTXXXXXXXXXXATRLVRCAYGEGTRYIP 288
           YD+++                  LK L+L++             +R+ R A+ E   Y+ 
Sbjct: 5   YDVVVVGAGIFGSCTAYNCQKIGLKTLLLEQFELGHKNGSSHGKSRITRYAHTE-VEYVD 63

Query: 289 LLIRARELWKELNELTKTNIYEKCGVLNTGLGDSSFIDNARRSAEIYGLEIENMTAEDIK 468
           L+  A     EL  +    +++K G+L    G+   ++    + ++ G++ E +   ++ 
Sbjct: 64  LVGDAYNQIFELERIRGEKLWKKTGLLWVSTGNE--VEKIHTNLKLKGIKHEVIKGTEVG 121

Query: 469 KRWNGIQVPGDYVGVFEPDAGFLRSELAVNAYVKLSKEAGAHQIFDCK-VSSXXXXXXXX 645
           KR+   +    + G+ +P  G + ++  +NA+    K+ G   I D + V S        
Sbjct: 122 KRYPQFKFDDSWNGLIDPMGGVIYADKWLNAFRDEFKKIGG-IIHDREIVLSHSEISNNL 180

Query: 646 XXXXXKGIFKGRKALVSAGTWVKDLLPNL 732
                K  +  +K + + G W+   LP+L
Sbjct: 181 FVTTNKSRYSSKKIIFTVGCWITKFLPDL 209


>U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical
           protein C15B12.8 protein.
          Length = 385

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 35/209 (16%), Positives = 82/209 (39%), Gaps = 1/209 (0%)
 Frame = +1

Query: 109 YDLIIXXXXXXXXXXXXXXXXXXLKVLMLDEHTXXXXXXXXXXATRLVRCAYGEGTRYIP 288
           YD+I+                  L+ L+L++++           +R++R A+ +   Y+P
Sbjct: 6   YDVIVVGAGIFGSCTAYHCQRLGLRTLLLEQYSLGHSNGSSHGKSRIIRYAHTD-PEYVP 64

Query: 289 LLIRARELWKELNELTKTNIYEKCGVLNTGLGDSSFIDNARRSAEIYGLEIENMTAEDIK 468
           L+  +    +EL +     ++ K G+L    G+   +D+     + + ++ E +    I 
Sbjct: 65  LVGDSYLQIEELEKKRGEKLWNKLGLLWAATGNQ--VDSISGHLKKHNIDHEVLPGTKIT 122

Query: 469 KRWNGIQVPGDYVGVFEPDAGFLRSELAVNAYVK-LSKEAGAHQIFDCKVSSXXXXXXXX 645
           +R+   +    +  + +P  G + +   + A+ +      G  Q  +  +S         
Sbjct: 123 ERYPQFKFDDKWTALIDPMGGVIYANKWLKAFQEEFITLGGTIQDNEPVISYGETDNVIV 182

Query: 646 XXXXXKGIFKGRKALVSAGTWVKDLLPNL 732
                 G +K  K + + G W+    PN+
Sbjct: 183 NVKTSTGEYKTNKIIFTVGCWITKFFPNV 211


>U39645-7|AAA80364.1|  190|Caenorhabditis elegans Hypothetical
           protein C14F11.6 protein.
          Length = 190

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 415 SAEIYGLEIENMTAEDIKKRWNGIQVPGDYVGVFEPDAGFLRSELAVNAYVKLSKEAGAH 594
           S EI+ + ++         +W+G+ + GD    F   AGFL      + +  LSKE GAH
Sbjct: 87  SGEIFDVAVDIRKDSPTYGKWHGVVLNGDNKHAFWIPAGFL------HGFQVLSKE-GAH 139

Query: 595 QIFDC 609
             + C
Sbjct: 140 VTYKC 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,859
Number of Sequences: 27780
Number of extensions: 318578
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)