Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p24f
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    29   0.70 
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   5.0  

>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 139 IFHVCFLFRYRNYNHTN*IKYYFNIISQSHTIKSRIS 29
           +F  CFL  ++ ++ TN I+Y+  II QS   K+ IS
Sbjct: 333 LFIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSIS 369


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 561 FSFQN--SLPRIKLSIDEVSKSHLSLNFYNPALVEIPHGNRLEEKNY 695
           + FQN  SLP IK  + ++     S+N  N   V+  H  +L+ + Y
Sbjct: 574 YQFQNMESLPLIKEELMQLKNEETSINIPNETAVKEFHDLKLQLEKY 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,605
Number of Sequences: 5004
Number of extensions: 58907
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)