Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p24f
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    29   5.2  
04_04_1303 - 32487174-32487871,32488583-32489123                       28   9.1  

>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/74 (17%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 513 VWDEDVV--LSARVATIPFSFQNSLPRIKLSIDEVSKSHLSLNFYNPALVEIPHGNRLEE 686
           +W  D +  ++  V  +  + + S+ +  ++ +  S  ++  + Y P L+++   N+   
Sbjct: 317 LWGYDTIWAVAQAVENVGVNNRTSIQKPSVARNSTSLENMETSVYGPELLKVILRNKFRG 376

Query: 687 KNYFYDVASPELNV 728
           K+ ++D+++ +L V
Sbjct: 377 KSGYFDLSNRQLQV 390


>04_04_1303 - 32487174-32487871,32488583-32489123
          Length = 412

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = +3

Query: 312 FLFFTS-----IDLPPAD-GFSFGSCLVARTLRLP 398
           FLFF +     +D PP D G+ FG+CL     RLP
Sbjct: 260 FLFFFADVRERLDDPPVDAGYYFGACLTGCLARLP 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,025,033
Number of Sequences: 37544
Number of extensions: 340830
Number of successful extensions: 726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)