Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p24f
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   2.6  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   2.6  
AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear horm...    29   2.6  
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    28   6.1  
AF038606-7|AAB92021.1|  344|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 65   DIEIILDSICVVIIPVSKQKTNMKYDTARTKTFER 169
            D +I+LD   + ++ +S+   N KY  ART+ FER
Sbjct: 1289 DFQILLDDHELTLLTISRDPLNEKYQEARTE-FER 1322


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 65   DIEIILDSICVVIIPVSKQKTNMKYDTARTKTFER 169
            D +I+LD   + ++ +S+   N KY  ART+ FER
Sbjct: 1289 DFQILLDDHELTLLTISRDPLNEKYQEARTE-FER 1322


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 65   DIEIILDSICVVIIPVSKQKTNMKYDTARTKTFER 169
            D +I+LD   + ++ +S+   N KY  ART+ FER
Sbjct: 1289 DFQILLDDHELTLLTISRDPLNEKYQEARTE-FER 1322


>AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 134 protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 495 SYVMDRVWDEDVVLSARVAT-IPFSFQNSLPRIKLSIDEV 611
           +Y++D   D   +L   V+T IP+ F NSL R+ LS++E+
Sbjct: 136 TYMVDVARD---ILKRDVSTKIPYQFHNSLERLALSLEEI 172


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 257 FNWSV*QNFIVPSDLFSFLVFKFIIIF-LSLV--QRFWCVRYHI 135
           +NW     +I+   LF F  F+F  IF +SL+   RF CV Y I
Sbjct: 97  WNWFPEPTYILTPYLFGFNYFQFAKIFSISLLSANRFTCVAYPI 140


>AF038606-7|AAB92021.1|  344|Caenorhabditis elegans Hypothetical
           protein C04C3.6 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 527 VFVPHSIHDVGEP*WESMEASFASKVIAAMWMALLGVHISIAARQS 390
           VF P   H  G+   E +   FA  VI+ +W  +L   +S+ A  S
Sbjct: 129 VFFPLRSHRAGDKSKEIIGVLFAFSVISQLWTPILITELSVGADAS 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,628
Number of Sequences: 27780
Number of extensions: 323607
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)