Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16p24f
(746 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 26 0.33
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 24 1.7
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 3.0
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 3.0
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 3.0
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 4.0
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 4.0
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 4.0
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 4.0
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 5.3
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 9.3
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 26.2 bits (55), Expect = 0.33
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 351 GFSFGSCLVARTLRLPCGYANVNSEQCHPHCCYDFRSKTCFHRFPSRFSYVMDRVWDEDV 530
G + S AR+ + C Y CH CC DF + C P+ DR W+ +
Sbjct: 721 GVAIVSASTARSEQFLCRYEAHCFALCH--CC-DFDACDCEMTCPAGCKCYNDRTWNTNA 777
Query: 531 V 533
V
Sbjct: 778 V 778
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 18 FALQEIRDFIVCDCEM 65
FAL DF CDCEM
Sbjct: 744 FALCHCCDFDACDCEM 759
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 546 VATIPFSFQNSLPRIKLSIDEVSKSHLSLNFYN 644
+AT P F N P+ +IDE + + L +N
Sbjct: 353 LATEPTLFSNVTPKFPRNIDEYNNNDLDTKKWN 385
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -1
Query: 230 IVPSDLFSFLVFKFIIIFLSLVQRFWCVRYHIS 132
+ PSD+ + F + F+ +W + HIS
Sbjct: 399 MTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHIS 431
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -1
Query: 230 IVPSDLFSFLVFKFIIIFLSLVQRFWCVRYHIS 132
+ PSD+ + F + F+ +W + HIS
Sbjct: 399 MTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHIS 431
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNIIS 59
Y N N+ N K Y+NII+
Sbjct: 341 YNNNNYNNYKKLYYNIIN 358
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 98 YNNYNKHNYNKLYYNI 113
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 331 YNNYNKHNYNKLYYNI 346
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 112 YRNYNHTN*IKYYFNI 65
Y NYN N K Y+NI
Sbjct: 331 YNNYNKHNYNKLYYNI 346
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 118 FRYRNYNHTN*IKYYFNI 65
+ Y N N+ N K Y+NI
Sbjct: 104 YNYNNNNYNNYKKLYYNI 121
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +3
Query: 546 VATIPFSFQNSLPRIKLSIDEVSKSHLSLNFYNPALVE 659
+AT Q+++ ++ + S + YNPAL++
Sbjct: 398 MATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQ 435
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,485
Number of Sequences: 438
Number of extensions: 4362
Number of successful extensions: 24
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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