Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16p21f
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 44 2e-05
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 44 3e-05
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 44 3e-05
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 44 3e-05
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 43 4e-05
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 42 1e-04
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 41 2e-04
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 41 2e-04
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 40 4e-04
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 38 0.002
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 38 0.002
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 33 0.034
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 33 0.045
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 33 0.045
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 30 0.32
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 29 0.55
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 29 0.73
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.97
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 29 0.97
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 28 1.3
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 2.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.0
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 3.0
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 3.0
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 26 5.2
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 26 5.2
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 5.2
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 9.0
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = +2
Query: 503 WNLVCEQRWLGSFVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIP 682
W+L + LG Q++++LGV G + LG ++D GRK ++ S ++ + F ++ A
Sbjct: 112 WHLSSQVSLLG---QSMFVLGVALGPLFLGPLSDLLGRKLVYIGSLIIYVCFCISCALAR 168
Query: 683 EYWTFLVIRFLYGVFGS 733
Y ++ + GV GS
Sbjct: 169 NYAQLVISMLIMGVVGS 185
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +2
Query: 437 DTITCTKWVFDTTYRSSSHAIEWNLVCEQ----RWLGSFVQTVYMLGVFTGAVTLGTMAD 604
+ I + F Y S A + + EQ R L + T+Y LG+ G + +++
Sbjct: 44 NVIVISSMTFLNQYGDSVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSE 103
Query: 605 KYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVFGSAG 739
++GR+ I+ + + + +A FLV RF G+FGS G
Sbjct: 104 QFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGSVG 148
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +2
Query: 437 DTITCTKWVFDTTYRSSSHAIEWNLVCEQ----RWLGSFVQTVYMLGVFTGAVTLGTMAD 604
+ I + F Y S A + + EQ R L + T+Y LG+ G + +++
Sbjct: 44 NVIVISSMTFLNQYGDSVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSE 103
Query: 605 KYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVFGSAG 739
++GR+ I+ + + + +A FLV RF G+FGS G
Sbjct: 104 QFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGSVG 148
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +2
Query: 437 DTITCTKWVFDTTYRSSSHAIEWNLVCEQ----RWLGSFVQTVYMLGVFTGAVTLGTMAD 604
+ I + F Y S A + + EQ R L + T+Y LG+ G + +++
Sbjct: 44 NVIVISSMTFLNQYGDSVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSE 103
Query: 605 KYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVFGSAG 739
++GR+ I+ + + + +A FLV RF G+FGS G
Sbjct: 104 QFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGSVG 148
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 43.2 bits (97), Expect = 4e-05
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Frame = +2
Query: 341 ESIAAWNSSEILAAVPKTSSGSLHNCLMYQDNDTITCTKWVFDTTYRSSSHAIEWNLVCE 520
E++ AW+ ++ L ++ H +++ T ++ SS+ I + + +
Sbjct: 58 ENVDAWDLTKALMSIDPNHPAHPHKWPLWKKLFVATVYTFLEVYVIWSSTACINFFDIYQ 117
Query: 521 QRW-----LGSFVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPE 685
W + VQ+++++G G + LG M+D +GRK ++ S +L +IF + A
Sbjct: 118 TNWHCSIQVSYLVQSLFIVGNAFGPMLLGPMSDIFGRKWVYVGSLILYIIFQIPQALAYN 177
Query: 686 YWTFLVIRFLYGVFGSA 736
+ + G FGS+
Sbjct: 178 LPMMAINSAIAGAFGSS 194
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +2
Query: 530 LGSFVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIR 709
+G ++LG G+V +++ YGR ++ + V+ ++F + W+ ++ R
Sbjct: 145 VGDLCSATFLLGFAAGSVLFAPLSEVYGRLPLYSVTLVIFVVFQIGGGCSKNIWSLVIFR 204
Query: 710 FLYGVFG 730
F +G FG
Sbjct: 205 FFHGFFG 211
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 554 YMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVFGS 733
+++G G++ ++D YGR I+ + ++ IF V WT ++RF GVFGS
Sbjct: 151 FLVGFGVGSLPFAPLSDIYGRFIIYFVTLLIFTIFQVGGGCAHNVWTLAIVRFFQGVFGS 210
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVF 727
T+Y++GV G + +++ YGR+ + + L + + A F+V RF G F
Sbjct: 82 TLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFSGFF 141
Query: 728 GSAG 739
GS G
Sbjct: 142 GSVG 145
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVF 727
++Y+LG +G V M + +GR+ + + IF +AVA + T ++ RF G F
Sbjct: 117 SLYVLGFASGPVVWAPMCELFGRRRPMIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFF 176
Query: 728 GSA 736
GS+
Sbjct: 177 GSS 179
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 539 FVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLY 718
F+ + LG G + G +AD +GRK + + ++ ++ + W +V RF+
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVI 190
Query: 719 G 721
G
Sbjct: 191 G 191
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +2
Query: 530 LGSFVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIR 709
+ S V+++G G++ ++ YGR ++ + ++ +F + WT +++R
Sbjct: 136 VSSLGSCVFLVGFGFGSLPFAPLSGIYGRFVVYFCTLLMFTLFQIGGGCAQNIWTLVILR 195
Query: 710 FLYGVFGS 733
F G FGS
Sbjct: 196 FFQGFFGS 203
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 33.5 bits (73), Expect = 0.034
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQL-IFGVAVAFIPEYWTFLVIRFLYGV 724
TV++LG +G + +++ GRK G+L IF ++VA + T ++ RF G
Sbjct: 178 TVFLLGYCSGPIIWAPLSELSGRKPPIL-IGMLGFGIFNISVAVGKDIQTIMMCRFFAGF 236
Query: 725 FGSA 736
F SA
Sbjct: 237 FASA 240
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 33.1 bits (72), Expect = 0.045
Identities = 12/61 (19%), Positives = 32/61 (52%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVF 727
++ ++G G + + +++ GR+ ++ + ++ ++ + A P L++RF G F
Sbjct: 144 SLMVVGFGIGPLVISPLSEMIGRRIVYLVTLMIYIVLQIPCALAPNIACLLIVRFFCGCF 203
Query: 728 G 730
G
Sbjct: 204 G 204
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 33.1 bits (72), Expect = 0.045
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVF 727
+++MLG G + M++ GRKT L +F +AVA + T ++ RF +G +
Sbjct: 181 SLFMLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRF-FGGY 239
Query: 728 GS 733
G+
Sbjct: 240 GA 241
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 30.3 bits (65), Expect = 0.32
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVF 727
++Y+ G +G + +++ GRK + IF +AVA + T ++ RF G
Sbjct: 140 SLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGFC 199
Query: 728 GSA 736
S+
Sbjct: 200 ASS 202
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 29.5 bits (63), Expect = 0.55
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMAD--KYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYG 721
T+++LG G + L +++ + GR+ I+ S ++ + + A L +RFL G
Sbjct: 126 TLFVLGYAIGPLILSPLSEIPQVGRQKIYVLSLLVFVCLQIPTALGSSLGVLLPMRFLAG 185
Query: 722 VFGS 733
FGS
Sbjct: 186 FFGS 189
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 29.1 bits (62), Expect = 0.73
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 289 SGRSSGSQMLDRRRRHKRIYSGMELIGNTCSSTENIIRQPT 411
+GRS+ + + + R +R YSG L G I+R PT
Sbjct: 423 NGRSNSTGKIGKNYRPRRTYSGRLLCGPNNYEVSTIMRSPT 463
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.7 bits (61), Expect = 0.97
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 131 KKSTITSHTMDKDRALEEMMGKLGDFGRYQCFQFILH 241
K + IT+ D+ E++M + G Y+CF IL+
Sbjct: 1530 KDAIITARDSDQTTIAEDLMKYFVEIGNYECFAAILY 1566
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 28.7 bits (61), Expect = 0.97
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 548 TVYMLGVFTGAVTLGTMAD--KYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYG 721
T+++ G G + +++ + GR+ I+ S ++ + + A L +RFL G
Sbjct: 126 TLFVEGYAVGPLIFSPLSEVPQIGRQKIYVLSLIVFICLQIPTALGSSLGVLLPMRFLAG 185
Query: 722 VFGS 733
VFGS
Sbjct: 186 VFGS 189
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +2
Query: 536 SFVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFL 715
+ + ++Y+L + +++ +GR+ + V+ ++F +A + RFL
Sbjct: 85 ALILSIYLLVFAISPMISAPLSEVFGRRMLLQVGNVIFIVFNMACGLARTKAQMYIFRFL 144
Query: 716 YGVFGSA 736
G FGSA
Sbjct: 145 AG-FGSA 150
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +2
Query: 551 VYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVIRFLYGVFG 730
+Y+LG+ G + ++ GRK L ++F + A + RF G+F
Sbjct: 100 LYILGIAFGPMIFAPFSEVNGRKIGVLVPFFLSILFTIGTASSDSVAAIMCTRFFAGLFA 159
Query: 731 SA 736
A
Sbjct: 160 GA 161
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 340 VCVDAVDPASVIRNCGHCH*RQHMHTSR 257
VC D ++P++ I +CG C+ H+ R
Sbjct: 199 VCTDTINPSTSIWSCGTCYHVFHLSCIR 226
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +1
Query: 4 QPFARPPPARTPGACTRHRVFPTTNFNLPSMVFVSLAEFLKHKEEYHNITHHGQGSRFRR 183
QP P + GA T + + + S + S + + Y N + G G R+RR
Sbjct: 282 QPTHNPTSSYGNGASTNYNASRPPSNHPHSSNYPSSSRRKPSPDRYSNYSSRGSGGRYRR 341
Query: 184 N 186
N
Sbjct: 342 N 342
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 3.0
Identities = 26/125 (20%), Positives = 45/125 (36%)
Frame = -3
Query: 717 YKKRMTRNVQYSGMKATATPNMSCNTPDQQKIVFLPYLSAIVPKVTAPVNTPSMYTVCTK 538
YK T + + ++ T M P +VF P L P + + Y K
Sbjct: 672 YKNFTTTSSSFDTLQGIDTEAMEYEFPKIPPLVFTPPLEEFSPDTSYSLVNAFAYCDRDK 731
Query: 537 EPSHLCSQTKFHSIACDEDLYVVSKTHLVQVIVSLS*YIRQLCRLPDDVFGTAASISDEF 358
+ CS T +E L ++ +++ + ++ YI L G +SD +
Sbjct: 732 KNVRNCSFTVIFRDGSEETLCAPTEESMIEWVAKIN-YISTL-----RTAGLRMPVSDSY 785
Query: 357 HAAID 343
H D
Sbjct: 786 HPKRD 790
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 443 ITCTKWVFDTTYRSSSHAIEWNLVCEQRWLGSFVQTVYMLGVFTGAVTLGTMADKYGRKT 622
+TC K + Y S I ++ ++RW S+ + VY++ TG + +A +K
Sbjct: 171 LTC-KNLHRKRYSSDMEYIAFSCSKDRRWRHSYYEDVYLVERATGRIE--HLASDQSKKI 227
Query: 623 IFC-WSGV-LQLIFGV 664
+ WS + +L++G+
Sbjct: 228 VVAEWSPIGHKLVYGL 243
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 536 SFVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVI-RF 712
S++ T Y L + G M++ GRK I ++ ++ +FG A+ + +LV+ R
Sbjct: 128 SWIGTAYSLAETSILPFCGIMSEVVGRK-IVLYTSIVLFLFGSAMCGAAQNMLWLVLCRA 186
Query: 713 LYGVFG 730
+ G+ G
Sbjct: 187 VQGIGG 192
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 536 SFVQTVYMLGVFTGAVTLGTMADKYGRKTIFCWSGVLQLIFGVAVAFIPEYWTFLVI-RF 712
S++ T Y L + G M++ GRK I ++ ++ +FG A+ + +LV+ R
Sbjct: 128 SWIGTAYTLAQTSILPFCGIMSEVVGRK-IVLYTSIVLFLFGSAMCGAAQNMLWLVLCRA 186
Query: 713 LYGVFG 730
+ G+ G
Sbjct: 187 VQGIGG 192
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 79 FNLPSMVFVSLAEFLKHKEEYHNITHHGQGSRFRRNDGKAR*FRAVPMFSIYSAYPR 249
+ L V + +A FLK +++ N+ H Q ++ R+D A +R P+ Y+ Y R
Sbjct: 362 YGLEMFVRLLVAIFLKDRDKIVNMVSHEQWVKYLRSDVLAS-YRQ-PLVQKYTFYTR 416
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 280 FSDSGRSSGSQMLDRRRRHKRIYSGMELIGNTCSSTENII 399
+ +GRS ++L + R RIYSG GN S +++ I
Sbjct: 414 YEGTGRSLSLKLLQQLREQSRIYSGS---GNNKSDSQSHI 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,728
Number of Sequences: 5004
Number of extensions: 77453
Number of successful extensions: 263
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -