Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16p20f
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 33 0.29
02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818 30 1.5
05_03_0019 - 7431578-7431583,7431650-7431868 30 2.0
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804... 29 3.5
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 29 4.7
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598 29 4.7
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 28 6.2
10_08_1037 - 22477358-22478752 28 6.2
07_03_1450 + 26620178-26620456,26622122-26622775 28 6.2
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 28 6.2
04_01_0445 + 5812277-5813893 28 8.1
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -1
Query: 633 HRGNPATVLYPPQNYHLHHHVTNISKHPHSSTIHSTITDRILMPLCHKHTAGG 475
H G+PA PP ++ LH + + ++ IH+ + P +H GG
Sbjct: 217 HSGSPAATARPPSSHTLHQAHLMPNANRYNGPIHNEVPGLAYQPHLEQHLGGG 269
>02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818
Length = 530
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 660 IARRHTIIGHRGNPATVLYPPQNYHLHHH 574
+ + HR +PAT+ +P + H HHH
Sbjct: 223 VVEEEDVTSHRFSPATMSHPRSSSHHHHH 251
>05_03_0019 - 7431578-7431583,7431650-7431868
Length = 74
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 159 MASRGGVMVTGTNGADFEHREKVAIQYHISA 251
M R G V+GT+ D HREK AI++ SA
Sbjct: 1 MHRRSGEQVSGTSAFDVLHREKAAIRFLGSA 31
>05_06_0193 +
26279105-26279229,26279725-26279833,26280362-26280437,
26280527-26281472,26281564-26281615,26281945-26282067,
26282144-26282219,26282308-26282492,26282615-26282806,
26282895-26282963,26283745-26283954,26285602-26285751,
26286283-26286344,26286428-26286503,26286575-26286745
Length = 873
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 484 CRR*RMLLRLIADRPRNESSNDKH 413
CR R LR A+ PR +SNDKH
Sbjct: 34 CRARRRGLRTAAELPRKSTSNDKH 57
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 95 VCGCTIQRDSFLLFCTYF*SENGFPRWCYG 184
+CGC + S L C+++ SE F WC G
Sbjct: 906 LCGCVVSDQSGGLQCSFYDSEKVF-AWCIG 934
>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
Length = 94
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 332 ICRELCHHPEEQYVVEEHTVLEAR--FVKCTY 243
+C ELC H + Y E HT E R V+C++
Sbjct: 17 VCSELCMHTQIHYTEETHTGRERRREQVRCSW 48
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Frame = -1
Query: 633 HRGNPATVLYPPQNYHLHHHVTNISKHP--HSSTIHSTIT------DRILMPLCHKHTAG 478
HR PP ++H HH + + HP H H + R++MPL HT+
Sbjct: 137 HRKELDAAAAPPLHHH-HHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTSE 195
Query: 477 GD 472
D
Sbjct: 196 SD 197
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 651 RHTIIGHRGNPATVLYPPQNYHLHH 577
RH+ HRG+P PPQ H HH
Sbjct: 227 RHSPAAHRGDPLPA-SPPQPQHQHH 250
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 633 HRGNPATVLYPPQNYHLHHHVTNISKHPHSSTIHSTI 523
H NP ++ PP YH HHH+ I + P ++T H T+
Sbjct: 143 HHLNPFSLPPPPPAYH-HHHL--IQEEP-ATTAHCTV 175
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +3
Query: 138 VLIFSQKMASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCV---FFHHILFLG 308
V+ + +K+A +G ++ G + + KVA Q + A KYC+ + +L L
Sbjct: 537 VVCWRRKLAKKGKEIIPGDFVSIWNFDAKVAFQDALYATENFDEKYCIGVGSYGSVLELR 596
Query: 309 MMAKLSADVLDKLDI--FILEVEEL 377
KL + D DI F+ E+E L
Sbjct: 597 SKEKLLHRMEDYFDIGAFLAEIEVL 621
>04_01_0445 + 5812277-5813893
Length = 538
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 236 LYGYFF-TMFKISPVCPRHHNTTAGSH 159
L G+FF T F + P HH TT G+H
Sbjct: 374 LGGFFFMTAFMLGLAVPYHHWTTPGNH 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,927,931
Number of Sequences: 37544
Number of extensions: 376360
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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