Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16p20f
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81564-2|CAB04568.1| 189|Caenorhabditis elegans Hypothetical pr... 77 2e-14
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 28 7.3
AY079166-1|AAL86013.1| 311|Caenorhabditis elegans heat shock-li... 28 7.3
AL132858-5|CAB60481.1| 311|Caenorhabditis elegans Hypothetical ... 28 7.3
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 28 7.3
Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z32679-4|CAA83591.1| 315|Caenorhabditis elegans Hypothetical pr... 27 9.7
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 27 9.7
AF125954-1|AAK68174.1| 340|Caenorhabditis elegans Serpentine re... 27 9.7
AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical ... 27 9.7
AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical ... 27 9.7
AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein. 27 9.7
AC006769-2|AAF60583.2| 340|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z81564-2|CAB04568.1| 189|Caenorhabditis elegans Hypothetical
protein K05C4.2 protein.
Length = 189
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Frame = +3
Query: 159 MASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCVFFHHILFLGMMAKLSADVL 338
M+SRG V GT+G DF++R++VA Y SA KS LK+ H ++ + M K+ +++L
Sbjct: 1 MSSRG-VRAAGTDGTDFQNRQRVAQHYQESAQYKSILKWFFVPHFLILVFMWLKVGSELL 59
Query: 339 -DKLDIFILEVEELQIPPPLWWEYIWCXXXXXXXXXXXAIKRNNIRHLRQYVYGIVALGF 515
+ L +P WEY+WC + +RN ++ L Y +G
Sbjct: 60 RTNFGWKNAFFDRLDMPSAYPWEYVWCFSFIPIVLAIYSFQRNKLKILHYAYYAEFVVGI 119
Query: 516 CPLLYCVLYYCGDVWRYLXXXXXXXXXXXXXXLWQG-YPYGLLWYAFVLLASQVHFFQLY 692
P C++ G + + ++G +P ++WY F +A Q+H F +Y
Sbjct: 120 FP---CMIGLGGQLPELM--EYAQDMEGSNTPTFKGIFPMVIIWYIFFAVALQIHGFSMY 174
Query: 693 F 695
F
Sbjct: 175 F 175
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 4.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 621 PATVLYPPQNYHLHHHVTNISKHPH 547
P +YP ++H H+ + ++ +HPH
Sbjct: 20 PMHHVYPSHHHHQHYQLPHLQQHPH 44
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 28.7 bits (61), Expect = 4.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 621 PATVLYPPQNYHLHHHVTNISKHPH 547
P +YP ++H H+ + ++ +HPH
Sbjct: 20 PMHHVYPSHHHHQHYQLPHLQQHPH 44
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 4.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 621 PATVLYPPQNYHLHHHVTNISKHPH 547
P +YP ++H H+ + ++ +HPH
Sbjct: 20 PMHHVYPSHHHHQHYQLPHLQQHPH 44
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 603 PPQNYHLHHHVTNISKHPHSSTIHSTIT 520
P +++H HHH H +SST+ T T
Sbjct: 310 PRRHHHGHHHHGTHHHHHYSSTVRPTTT 337
>AY079166-1|AAL86013.1| 311|Caenorhabditis elegans heat shock-like
protein protein.
Length = 311
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 606 YPPQNYHLHHHVTNIS-KHPHSSTIHSTITDRIL 508
Y P YHLH H N+ P S+T+ + + D ++
Sbjct: 243 YQPSFYHLHVHFINLKYDAPASTTMSAILLDDVI 276
>AL132858-5|CAB60481.1| 311|Caenorhabditis elegans Hypothetical
protein Y113G7A.9 protein.
Length = 311
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 606 YPPQNYHLHHHVTNIS-KHPHSSTIHSTITDRIL 508
Y P YHLH H N+ P S+T+ + + D ++
Sbjct: 243 YQPSFYHLHVHFINLKYDAPASTTMSAILLDDVI 276
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 603 PPQNYHLHHHVTNISKHPHSSTIHSTIT 520
P +++H HHH H +SST+ T T
Sbjct: 310 PRRHHHGHHHHGTHHHHHYSSTVRPTTT 337
>Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical
protein T23D8.1 protein.
Length = 568
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 194 CPRHHNTTAGSHF 156
CP H +TT+GSHF
Sbjct: 181 CPHHMHTTSGSHF 193
>Z32679-4|CAA83591.1| 315|Caenorhabditis elegans Hypothetical
protein C05B5.4 protein.
Length = 315
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 434 VSWSISNQT*QHTSPPAVCLWHSG 505
+SW ++ Q +HT P V W SG
Sbjct: 73 ISWPVTEQFLEHTVAPFVSYWPSG 96
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 513 FCPLLYCVLYYCGDVW 560
FCP L C YYC W
Sbjct: 388 FCPSLECFQYYCEPCW 403
>AF125954-1|AAK68174.1| 340|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 60 protein.
Length = 340
Score = 27.5 bits (58), Expect = 9.7
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +3
Query: 111 YNGIVFCCFVLIFSQKMASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCVFFH 290
Y G V+C IF +A+ GGV+ T + + I+YH +K+ +F
Sbjct: 84 YFGAVWCFNGYIFILSVATAGGVLNIHT-----LYYRMITIKYH------DNMKFRIFIF 132
Query: 291 HILFLGMMAKLSADVLDKLDIFILEVEELQIPP 389
+ +L +A + + +D+ + +E LQ P
Sbjct: 133 GLWYLFPIAIIVLSYIPPIDLDSVYLETLQAHP 165
>AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical
protein T04C4.1b protein.
Length = 893
Score = 27.5 bits (58), Expect = 9.7
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Frame = -1
Query: 639 IGHR---GNPATVLYPPQNYHLHHHVTNISKHPHSSTIHSTITDRILMPLCHKHTAG--G 475
+GHR +P + Q H HH NI++ T D P KH +
Sbjct: 42 VGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTDTGYDPEARPPKFKHRSPFYQ 101
Query: 474 DVCCYV*-----LLIDQETRVATTSTRCIPTR 394
CC LLI+ E+RV + IPTR
Sbjct: 102 SSCCLKPTDLRMLLIEAESRVLYDTATVIPTR 133
>AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical
protein T04C4.1a protein.
Length = 955
Score = 27.5 bits (58), Expect = 9.7
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Frame = -1
Query: 639 IGHR---GNPATVLYPPQNYHLHHHVTNISKHPHSSTIHSTITDRILMPLCHKHTAG--G 475
+GHR +P + Q H HH NI++ T D P KH +
Sbjct: 103 VGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTDTGYDPEARPPKFKHRSPFYQ 162
Query: 474 DVCCYV*-----LLIDQETRVATTSTRCIPTR 394
CC LLI+ E+RV + IPTR
Sbjct: 163 SSCCLKPTDLRMLLIEAESRVLYDTATVIPTR 194
>AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein.
Length = 568
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 194 CPRHHNTTAGSHF 156
CP H +TT+GSHF
Sbjct: 181 CPHHMHTTSGSHF 193
>AC006769-2|AAF60583.2| 340|Caenorhabditis elegans Hypothetical
protein Y45G12C.7 protein.
Length = 340
Score = 27.5 bits (58), Expect = 9.7
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +3
Query: 111 YNGIVFCCFVLIFSQKMASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCVFFH 290
Y G V+C IF +A+ GGV+ T + + I+YH +K+ +F
Sbjct: 84 YFGAVWCFNGYIFILSVATAGGVLNIHT-----LYYRMITIKYH------DNMKFRIFIF 132
Query: 291 HILFLGMMAKLSADVLDKLDIFILEVEELQIPP 389
+ +L +A + + +D+ + +E LQ P
Sbjct: 133 GLWYLFPIAIIVLSYIPPIDLDSVYLETLQAHP 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,824
Number of Sequences: 27780
Number of extensions: 323485
Number of successful extensions: 886
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -