Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p20f
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.52 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 621 PATVLYPPQNYHLH-HHVTNISKHPHSSTIH 532
           P+T  + P +YH H HH +    H  SS  H
Sbjct: 306 PSTAGFLPPSYHPHQHHPSQYHPHRGSSPHH 336



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 603 PPQNYHLHHHVTNISKHPH 547
           PP  +H HHH T   +H H
Sbjct: 349 PP--HHHHHHQTQSLQHLH 365


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 201 ADFEHREKVAIQYHISALNKSRLKYCVFF 287
           A+ + RE++   +   AL   R   CVFF
Sbjct: 409 AEQDRRERMEFDWKQVALVSDRALLCVFF 437


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 462 NNIRHLRQYVYGIVALGFCPLLYCVLYYCGD 554
           NN  + ++  Y I+ +   P+   V  YCG+
Sbjct: 344 NNYNNYKKLYYNIINIEQIPVPVPVPIYCGN 374


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 588 HLHHHVTNISKHPHSSTIH 532
           H H H T    H H++T H
Sbjct: 423 HSHIHATPHHHHSHAATPH 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,935
Number of Sequences: 438
Number of extensions: 3973
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)