Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p18f
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   3.1  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   7.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   9.4  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   9.4  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.4  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 203 TSRHCPLIHCCPPGQLGGTVITFLESKSNKSGLAFDSVTTPSNRTISFNI 54
           T+  CP+ H   P  L G   + L S    S ++  ++ +P N     N+
Sbjct: 373 TASFCPVKHGVSPPSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNL 422


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 346 CPPGQVYINGQWRDVW 393
           CPP  VYING +  ++
Sbjct: 200 CPPPMVYINGNYSSIF 215



 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 439 CPPGQVYINGQCRDIWFKS 495
           CPP  VYING    I+ +S
Sbjct: 200 CPPPMVYINGNYSSIFNQS 218


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 211 NAATPSNMITVPPNCLP 261
           N  TP+  ITVPPN +P
Sbjct: 288 NPYTPAPSITVPPNYIP 304


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 406 SPSNMITVPPNCPPGQVYINGQCRDIWFKSIFGLSEKR 519
           SP+ +  +PP  P G   IN + R+   + +F     R
Sbjct: 458 SPTFVADIPPKTPWGTTLINRKLREEVLREVFAPKHAR 495


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +1

Query: 283 QCRDVWRNEASPSNMITVPPNCPPGQVYINGQWRDVWRNEASPSNMITVPPN 438
           +C  VW+ + + +   T+       QVY N  W  +   +  P+++++V  N
Sbjct: 232 ECSVVWQRQRTLTEFRTMSIKPYEIQVYRNKHWFPISTEDLLPNDVVSVLHN 283


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 209 RHTSRHCPLIHCCPPGQLGGTVITFLESKSNKSGLAFDSVTTPSNRTIS 63
           RH   HCP +         GT+ + +E K N S  A    T+ SN  ++
Sbjct: 782 RHPVPHCPSVDLYINSPQCGTLHSGVEYKFNVSAYACQPSTSISNTRLA 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,848
Number of Sequences: 5004
Number of extensions: 58553
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)