Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16p17f
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 73 2e-13
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 67 2e-11
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 62 6e-10
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 59 3e-09
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 30 2.4
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 29 5.4
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 28 7.2
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 28 7.2
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853... 28 7.2
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 28 9.5
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/94 (37%), Positives = 56/94 (59%)
Frame = +2
Query: 395 ELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHAR 574
E+L+I + + G T+ + ++G +N GFYR Y +N + + A TQF+P AR
Sbjct: 93 EILIIRFNEVLPVGEGTLVIAFKGTLNDKM--HGFYRSVYELNGEKKNMAVTQFEPADAR 150
Query: 575 KAFPCFDEPQFKSIYIISITRDRSLSPTYSNMPI 676
+ FPC+DEP FK+I+ I++ S + SNMP+
Sbjct: 151 RCFPCWDEPSFKAIFKITL-EVPSETVALSNMPV 183
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 66.9 bits (156), Expect = 2e-11
Identities = 35/106 (33%), Positives = 55/106 (51%)
Frame = +2
Query: 365 PDPFTIDRHYELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYA 544
P ++ E+L++ A + G + +R+ G +N RGFYR Y + + A
Sbjct: 74 PAEVSVFEEDEILVLEFAGELPLGEGVLAMRFNGTLNDQM--RGFYRSKYEYKGETKNMA 131
Query: 545 TTQFQPFHARKAFPCFDEPQFKSIYIISITRDRSLSPTYSNMPISN 682
TQF+ AR+ FPC+DEP FK+ + +++ L SNMPI N
Sbjct: 132 VTQFESVDARRCFPCWDEPSFKAKFKLTLEVPSEL-VALSNMPIVN 176
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/94 (34%), Positives = 50/94 (53%)
Frame = +2
Query: 395 ELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHAR 574
E+++I Q + G + + + G +N RGFYR Y + R A TQF+ AR
Sbjct: 80 EIVVIGFGQDLPIGEGVLKMDFTGTLNDQM--RGFYRSKYEYKGESRNMAVTQFEAADAR 137
Query: 575 KAFPCFDEPQFKSIYIISITRDRSLSPTYSNMPI 676
+ FPC+DEP FK+ + +++ L SNMP+
Sbjct: 138 RCFPCWDEPAFKAKFKLTLEVPSEL-VALSNMPV 170
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/95 (31%), Positives = 50/95 (52%)
Frame = +2
Query: 395 ELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHAR 574
E+L++ + G + + + G +N RGFYR Y + + A TQF+ AR
Sbjct: 90 EILVLEFDGELPLGEGVLAMDFNGTLNDQM--RGFYRSKYEYKGETKNMAVTQFEAVDAR 147
Query: 575 KAFPCFDEPQFKSIYIISITRDRSLSPTYSNMPIS 679
+ FPC+DEP FK+ + +++ L SNMP++
Sbjct: 148 RCFPCWDEPAFKAKFKLTLEVPSEL-VALSNMPVA 181
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 123 HSRLDLSSSMGTARPVPIRIHSTVGSSIVPIARSSP 16
H RLD S + P P R S+ GSS P + P
Sbjct: 37 HHRLDRSKFLPLIHPTPARFISSTGSSFPPYSEPPP 72
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 539 YATTQFQPFHARKAFPCFDEPQFKSIYIISITRDRSLSPTYSNMPISNTE 688
+ +Q Q HAR FPC D P + + + + LS + +S +
Sbjct: 125 FVFSQCQSIHARSVFPCHDTPAARITFDLLLNVPTQLSAVAAARHVSRRD 174
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 601 GLVEAREGLPSMEWLELCGSIISELIVDVIVTSVKT 494
GL++ G PS++ LEL G SE + V V +K+
Sbjct: 484 GLLQLSTGCPSLQKLELRGCFFSERALAVAVLQLKS 519
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 105 SSSMGTARPVPIRIH--STVGSSIVPIARSSPPHDQL 1
SSS A P R H S+ ++P+ R+SPPH Q+
Sbjct: 200 SSSSSPAHRHPRRPHWSSSAAQGLLPLLRASPPHLQV 236
>01_01_0014 +
84379-84600,84737-84830,84935-85086,85212-85299,
85348-86681,87291-87398,87500-87583
Length = 693
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 501 TEVTITSTISSDIMLPHNSSHSMLGRPSRASTSPSLNQY---TSFQSPETGALVRHTRTC 671
T +T+ T SS + + H S P R SP L + SP+ G L RHTR C
Sbjct: 518 TPLTVEET-SSSVSVVHIEPMSSKVSPVRQRGSPCLEKRGLSPKKLSPKKGILKRHTRGC 576
>05_01_0168 +
1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 291 NTIC-SMLLARTSISMLTIPSNLASFKKTSRSTLIVLGWIVSRSR 160
++IC S ++ +I L+ PS+L +KT + ++ GW+ ++R
Sbjct: 342 SSICYSCVVVIRNIVELSTPSSLVEVQKTVNLSSLLAGWLARKNR 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,352,154
Number of Sequences: 37544
Number of extensions: 534428
Number of successful extensions: 1543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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