Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p14r
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    28   2.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   4.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.2  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   8.2  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   8.2  

>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 572 LECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFS 709
           L C F+F +  G+ +  L CLL    +  +   + +L+  +GI F+
Sbjct: 19  LPCLFIFAAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFFA 64


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 575 ECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFSL 712
           E   L +S    + D L  LL FL+ C     KR ++ ++G  FSL
Sbjct: 178 EASCLVLSRLFSRDDGLDLLLGFLHHCESSWFKRSIFYKIGCLFSL 223


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 21  FLNPVRANNYPFGK---YFALFSFYNFKYNEI 107
           F++P  +N  PF     YF+LFSF++F +  +
Sbjct: 96  FIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSL 127


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 516 GLRYKHFEATVHDSLFFNYS-A*LYYIFQ*FL 424
           G++Y+H+  T    LF NY+ +  Y +F+ +L
Sbjct: 284 GMKYRHYSPTAKVLLFVNYTESDAYGVFEKYL 315


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 470 FSIIVHSFITY-FNDFFLLI*SVFIIVGFQKIQYN*IRSFITIDQIL*DSSFEK 312
           FS+I  SF+    N F LLI S+FII G         R+FI     L   SFEK
Sbjct: 523 FSLIPSSFVPMNRNIFLLLISSLFIIAGNTGFPCF-FRTFIWTTYKLYPFSFEK 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,723,183
Number of Sequences: 5004
Number of extensions: 81198
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)