Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p14r
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    35   0.075
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    31   0.93 
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202...    29   6.6  

>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 35.1 bits (77), Expect = 0.075
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +2

Query: 572 LECCFLFISFF--GLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIR-FSLRCRPCLLQPM 742
           L  C L++S F    +I++ R +  ++   F+ + + L   E+G R F+     CL+QP+
Sbjct: 323 LRACLLYLSIFPEDYEINKQRLINRWIAEGFILEEQGLTSYEVGERYFNYLINRCLIQPV 382

Query: 743 DSRSVKYTAAQIDAI 787
            S+  +  A Q+  I
Sbjct: 383 GSKHGQAKACQVHGI 397


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 70  LCFPFITLSIMKFAIT---HAFEFIYCILICF*TVIGNISVYVKIYPYI 207
           L  PF +LSI KF I+    A  F Y I I F   + N+    K+ P++
Sbjct: 358 LAIPFFSLSIRKFLISIAVFALVFFYMIPIAFVQSLANLEGIEKVAPFL 406


>11_04_0094 +
           13418604-13418680,13419331-13419400,13420078-13420236,
           13420334-13420445,13420530-13420649,13422249-13422406,
           13422987-13423217,13424621-13424713,13425088-13425227,
           13426331-13426401,13427554-13427637,13427752-13427846
          Length = 469

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 167 ITV*KQIRMQYMNSKAWVMANFIILKVIKGKQSKIFS 57
           + V K  R QY N+K W     +++K   G  S+ +S
Sbjct: 5   VMVAKDTRRQYRNNKRWAGLQCVLVKFHHGSSSQFYS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,582,918
Number of Sequences: 37544
Number of extensions: 396656
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)