Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p13f
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 523  PHSTLYYERLRVVIINPIKNMYLESTDVYREKRTRLSAPCA 645
            PHSTL Y+     ++ P K    +S D  +E  T  +A  A
Sbjct: 1072 PHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAA 1112


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 698 AAIIYKIYNILYNRGSRKAQGADNRVLFSL*TSVLSKYI 582
           +++I +  N+  +RGS    G +N   + + T+  SKY+
Sbjct: 173 SSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYM 211


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 218 AFDSIGEWVECVEILDGHTIER 153
           A  SI E+    E+L  HT+E+
Sbjct: 259 AMSSIAEFSVSTEVLQDHTLEK 280


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 91  DNALLCAR*QTANLC*LQNVMADETRKM 8
           D+  LC + +  NL  + +++ DE+ +M
Sbjct: 22  DDITLCLKQENLNLDDIDSLLEDESERM 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,272
Number of Sequences: 438
Number of extensions: 4374
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)