Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p11f
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein...    29   6.0  
AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA...    29   6.0  

>AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein
           protein.
          Length = 1641

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 676 KNCTLYKKHIRTRNKIKYKNRLVK*NLFINEI--YAKILTVVFKLFNNLT 533
           KN + Y K I+ + K+ YK R  + NLF  E   +AK++T + + F+  T
Sbjct: 199 KNKSFYSKFIKVKTKLYYKQR--RFNLFREESEGFAKLITELNQEFDENT 246


>AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA
           protein.
          Length = 1641

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 676 KNCTLYKKHIRTRNKIKYKNRLVK*NLFINEI--YAKILTVVFKLFNNLT 533
           KN + Y K I+ + K+ YK R  + NLF  E   +AK++T + + F+  T
Sbjct: 199 KNKSFYSKFIKVKTKLYYKQR--RFNLFREESEGFAKLITELNQEFDENT 246


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,650,984
Number of Sequences: 53049
Number of extensions: 601042
Number of successful extensions: 1426
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)