Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16p10f
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    29   0.98 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.0  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   3.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.0  
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp...    27   3.9  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   6.9  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   6.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   9.1  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 680 YQGPECVEYAFHKFYRVVKYKRKQYP*YNKNQRHC 576
           + G +C     HK    ++ ++ Q P YN N RHC
Sbjct: 167 FSGHDCPGEGEHKIMEYIRTQKAQ-PSYNPNTRHC 200


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 624 FYNPVKFMKRIFYALGPLIVLVTFIILIAHGDKGNLSSFARSSDWMNFL 770
           F+N +     +F    P+I+ + FI LI+     +LSS    S W+ FL
Sbjct: 133 FFNILLRSFNLFIIFSPIIITLPFIALISFLHLRSLSSLT-VSIWLRFL 180


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +3

Query: 294 LSQQDAVGVWRAVPFFKGVGYLRLLVTTLSAIYTSVYLSLVITYSLYTLSNNIPFPECMG 473
           L  +  +  WR  P    + ++ ++V+  S+I   +Y+S+ +  +L  L    P    +G
Sbjct: 488 LPMKQTILFWRLQPLEACIFFISVIVSVFSSIENGIYVSVCLAAALLLLRIAKPHGSFLG 547


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 370 TNNRR*PTPLKNGTALQTPTASCWLSCPIANCSKTT 263
           T+ R  PTP  NGT++     S   S      SKTT
Sbjct: 262 TSPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTT 297


>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
           Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 88

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 322 QTPTASCW-LSCPIANCSKTTGKATTTNASVN 230
           QT TA C  L   + NC KTT + T +  ++N
Sbjct: 47  QTDTAQCANLVAALENCMKTTHRKTKSENTIN 78


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 LVTTLSAIYTSVYLSLVITYSLYT 437
           L   L  IYT++Y+  V+ + LYT
Sbjct: 102 LTHVLQQIYTTLYVEFVVKHPLYT 125


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 292 CPIANCSKTTGKATTTNASVNTRANVRP 209
           C  A C+K   +A    + +NT  N RP
Sbjct: 572 CTFAGCNKRFTRAYNLKSHMNTHTNYRP 599


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 96  KLKKWISWPLIRAHLCTVAVAVGFTSTWRAPR 191
           K K  +S+ L+RA   TVA      S W  PR
Sbjct: 345 KEKSIVSYDLLRAQSTTVASVKHLGSAWLPPR 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,737
Number of Sequences: 5004
Number of extensions: 70152
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)