Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o19f
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583     29   2.9  
08_02_0977 + 23227081-23228004,23228244-23228315,23229788-232298...    29   5.1  
12_02_0095 + 13559997-13560232,13561295-13561683,13562092-135623...    28   6.7  
03_01_0166 + 1362254-1363138,1363225-1363545                           28   6.7  
01_01_1082 - 8516525-8517409                                           28   6.7  
07_01_0933 + 7863508-7864368                                           28   8.9  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    28   8.9  

>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
          Length = 602

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 413 WHHNLFSKTLALWIAAVISTSFSSCGYKGVHVLF 312
           W   + +  L LW+ AV+  SF   GY GV  LF
Sbjct: 102 WFAGVAALYLPLWLVAVVGASFGLVGY-GVQFLF 134


>08_02_0977 +
           23227081-23228004,23228244-23228315,23229788-23229841,
           23231763-23231840,23233080-23233173,23233352-23233423,
           23233537-23233584,23233608-23233777,23234016-23234088,
           23234850-23235199
          Length = 644

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 252 VKTSGINHMATDCEMQEVPIEKNVNTLVTTARKRSADNSGYPQSKR 389
           V   G+++ AT C    +  EK + TL+   +   A N+ Y Q KR
Sbjct: 355 VGRDGVHYSATKCTKYTISTEKVMITLIHGKQVLEAVNNPYGQKKR 400


>12_02_0095 +
           13559997-13560232,13561295-13561683,13562092-13562387,
           13562475-13563361,13563440-13563562,13563693-13563981,
           13564211-13564249
          Length = 752

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 404 NLFSKTLALWIAAVISTSFSSCGYKGVHV---LFNWDFLHLTI 285
           N    T A WI  VI+  +S+C Y    +    ++W  +HL I
Sbjct: 638 NYIYDTFAHWILLVITPKWSTCHYLNSRIDKNAYDWTPIHLAI 680


>03_01_0166 + 1362254-1363138,1363225-1363545
          Length = 401

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 171 PICGDANQPGQCHNVHISTNFYYGFHEVKTSGINH 275
           P CG+A      H V + ++F+YG   + TS   H
Sbjct: 41  PACGEAFPSPDTHEVVVFSHFFYGGFALPTSKFFH 75


>01_01_1082 - 8516525-8517409
          Length = 294

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 171 PICGDANQPGQCHNVHISTNFYYGFHEVKTS 263
           P CG+A      H V + ++F+YG   + TS
Sbjct: 40  PACGEAFPTSDMHEVVVFSHFFYGGFSLPTS 70


>07_01_0933 + 7863508-7864368
          Length = 286

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 482 ETTRYIWIVVCWTKQTGV----GVGGCWHHNLFSKTL 384
           E TR   +VV W  Q  V     VGG W HN ++ TL
Sbjct: 155 EATRGRGMVVSWAPQQDVLKHRAVGGFWTHNGWNSTL 191


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 272 VDTRRFYFMKSIVKICGYVYIVALTWLVGV 183
           +DT    F+  +  I G +Y +  TW+VG+
Sbjct: 65  LDTMMGVFVPCLQNILGIIYYIRFTWIVGM 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,318,637
Number of Sequences: 37544
Number of extensions: 442360
Number of successful extensions: 1172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)