Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o19f
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   6.9  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   6.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 252 VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 344
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 252 VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 344
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 385  SVFEKRLWCQQPPTPTP 435
            S  E+  W QQ P P P
Sbjct: 1343 STLERTAWRQQQPPPPP 1359


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 389 FSRRGYGANNHQLQPLFASSNTQQSRYISLSHG 487
           F +  YGANN Q Q +    NT+    I   +G
Sbjct: 284 FMKSEYGANNVQYQGVQDIFNTESIAKIMSKNG 316



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 318 NVNTLVTTARKRSADNSGYPQSK 386
           NVN L+   R  ++DN    Q+K
Sbjct: 573 NVNDLIMNTRCANSDNQNNNQNK 595


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 680 KNVRHVCSRK-DFPIYLLN 627
           KN+R VCS+K D P  LL+
Sbjct: 37  KNLRKVCSKKNDTPKELLD 55


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 680 KNVRHVCSRK-DFPIYLLN 627
           KN+R VCS+K D P  LL+
Sbjct: 11  KNLRKVCSKKNDTPKELLD 29


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -2

Query: 567 SADKMEISNYCFRLHLLH*TKDIIS 493
           +A +ME ++   ++H+   TK+++S
Sbjct: 547 TASRMEATSQAMQIHISQSTKELLS 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,782
Number of Sequences: 438
Number of extensions: 4957
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)