Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o13f
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    31   0.14 
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   1.00 
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   2.3  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   7.0  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.3  

>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 216 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQY 127
           +L P C    R +FW C F + R  + AQY
Sbjct: 63  VLNPYCHVDLRARFWICPFCFQRNPLPAQY 92


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 216 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAVCN 112
           +L P C    R +FW C F   R  +  QY  + N
Sbjct: 63  VLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISN 97


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 198 LPSFRVQFWFCHFFYSRTCIAAQYI 124
           + S  +  WFC FF+   CI+A YI
Sbjct: 304 IQSIHLGLWFC-FFFLTACISALYI 327


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 424  TRGLYLRWQEICKTP--IIVSSPEVEWTSTELKNALRSIE 537
            TRGL   W EI KTP  +++++ E+  +S ++ +++ + E
Sbjct: 1223 TRGLEKLWNEIEKTPDKLLLTTGEIYPSSHKIGSSVETFE 1262


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 639 LKSIYNKHIHHHYFTKYK 586
           ++ + N HIH+HYF  +K
Sbjct: 314 IRRLDNPHIHYHYFDFHK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,934
Number of Sequences: 5004
Number of extensions: 62813
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)