Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o13f
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               27   0.20 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.8  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 586 FIFCKIVMMYVFVVDAF*IDKLIS*MLTKNIPLDLFVLSQ 705
           FI C +   ++   D   +DKL+     KNI +D+ +LS+
Sbjct: 78  FITCALEKSHIIQNDEIQLDKLVEMANRKNISIDVKMLSE 117


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 345 VKCKQRRVAKRSAVRNRRGLISG 277
           ++ +  R++   ++RNR GL+SG
Sbjct: 370 IELQDLRMSPLPSIRNRSGLVSG 392


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 106 VLVTYSYI-LCSNTSSRVKKVTKPKLNSERREATR 207
           +L T S + LC+ +  R   VT+P + S RR + R
Sbjct: 120 LLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKR 154


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -1

Query: 279 GRENSQQTLLRFT-PQ*PHTINLLPPRC 199
           G  NS+     F  PQ P+T+    PRC
Sbjct: 129 GTGNSRANTYNFDYPQVPYTVKNFHPRC 156


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 268 VLPPRNKSSAVAHCR 312
           V PPR K++   HC+
Sbjct: 338 VEPPRRKNNCPLHCK 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,633
Number of Sequences: 438
Number of extensions: 4069
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)