Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o08r
         (853 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   1.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   1.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.4  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 170 PDAGRKVHVATGGAFREHGC 229
           PD  RK ++   G  RE+GC
Sbjct: 175 PDDCRKYYICLEGTAREYGC 194


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 170 PDAGRKVHVATGGAFREHGC 229
           PD  RK ++   G  RE+GC
Sbjct: 175 PDDCRKYYICLEGTAREYGC 194


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 174 TPAGRYTSRLVAPSVSTGATRMFSPRRYSSQMTSASSSLGSI 299
           +P+ R+T  L+     T  T      R + + T ASS  G +
Sbjct: 264 SPSNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRCGQL 305


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 276 ASSSLGSIHQSGALTGLPSLT 338
           A S   SI   GAL+GL SLT
Sbjct: 674 AESLNQSISSPGALSGLSSLT 694


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 276 ASSSLGSIHQSGALTGLPSLT 338
           A S   SI   GAL+GL SLT
Sbjct: 566 AESLNQSISSPGALSGLSSLT 586


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 111 GYALSQVGPSRTRDRSPSSYQTPAGRYTSRL 203
           G+A + V  S+    SPSS   P G +T  +
Sbjct: 258 GHAFTLVDASQHDLGSPSSGPAPPGDFTENM 288


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/30 (23%), Positives = 12/30 (40%)
 Frame = -2

Query: 510 CPLRNSSSDGSRLTRSCLRCSIHSCLGISI 421
           C   N+      + R C  C +  CL + +
Sbjct: 224 CKYGNNCEIDMYMRRKCQECRLKKCLSVGM 253


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,572
Number of Sequences: 336
Number of extensions: 4237
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)