Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o08r
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 641 LGPQQRPLHNCHDHHSDEPERLHAGAP 561
           +GP   P H+ H H +   + LH   P
Sbjct: 343 MGPTMGPPHHHHHHQTQSLQHLHYRQP 369


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/34 (26%), Positives = 11/34 (32%)
 Frame = -3

Query: 662 HGRPRLHLGPQQRPLHNCHDHHSDEPERLHAGAP 561
           HG   +H  P     H    HH       H+  P
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYP 454


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 638 GPQQRPLHN-CHDHHSDEPERLHAGAPRHDRRERLQLEPRPGRPAH*GTLHQMGP 477
           G Q +P H   H H S  P+      P+  ++++ Q   +  +        Q GP
Sbjct: 804 GDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGP 858


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = -1

Query: 490 IRWVQANTFLPAMQYSFVPWNFDNETTEISRKY 392
           + ++    ++P+M+  F+ WN   E +++ R +
Sbjct: 13  LAFIAEEGYVPSMREKFLGWNVPPEYSDLVRPH 45


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 316 NAPLWWIDPNDEEALVIWDEYLLG 245
           + P  WI P D + +V   E ++G
Sbjct: 76  DGPYKWISPGDTKVMVEHGELVMG 99


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 15/71 (21%), Positives = 25/71 (35%)
 Frame = -2

Query: 510 CPLRNSSSDGSRLTRSCLRCSIHSCLGISITRQQR*AGNTLTSTRRTLMKFTPSWRRPLR 331
           C   N+      + R C  C +  CL + + R +        + +R   K      +P  
Sbjct: 223 CKYGNNCEIDMYMRRKCQECRLKKCLTVGM-RPECVVPEYQCAVKRKEEKAQKEKDKPNS 281

Query: 330 KASRSTPRSGG 298
                +P SGG
Sbjct: 282 TTMNGSPGSGG 292


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 278  GTCHLG*VSPRREHPSRTRAHGR 210
            G  H G + P   HP+   AH R
Sbjct: 1752 GNGHSGTMGPPVGHPTNASAHSR 1774


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 584 ERLHAGAPRHDRRERLQLEPRPG 516
           E +H G+  + R ER+QL  + G
Sbjct: 319 EAIHTGSVINTRGERIQLTEKNG 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,444
Number of Sequences: 438
Number of extensions: 6069
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)