Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o08f
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.2  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   1.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.6  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   2.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.8  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    27   2.8  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   3.8  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   5.0  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   5.0  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   5.0  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    26   6.6  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   6.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   8.7  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   8.7  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   8.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +2

Query: 536 EYVYVHPDVPLFVDYHNLSPNHLCFGAQIAEPYSSRRTHTVLAYDVWFLSNVKKAHKHAV 715
           E+V ++P +   +++ N  P++     ++ +P+S       + YDVWFL    +  +   
Sbjct: 6   EWVAIYPQIYDILEHINYVPSNTLQRLRLHQPWSK------IDYDVWFLYASDEIRETCK 59

Query: 716 ANYLGQ 733
             Y G+
Sbjct: 60  VKYYGE 65


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 308 FDDASGARGIKFKWNATPQTRLE 376
           F++     G++F WN  P TR+E
Sbjct: 3   FEEIEERDGVRFTWNVFPSTRIE 25


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 312 MMPLVLEALSLSGTPLRRQDSKTAL-ILDRSTG 407
           +MPL++EAL    +P+RR  +  AL  L  STG
Sbjct: 688 LMPLIIEALQDQSSPIRRAAALKALGNLSSSTG 720


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 526 IEPVSFSDCTVVVFFDNRRGITLLGQLYGIYLVHLHGTGVP 404
           IEP S S+ T++ F  +   + LL    GI+L H HG   P
Sbjct: 104 IEPPSVSNPTLMFFVGS---LGLLSNFVGIFLFHDHGHDHP 141


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 23/81 (28%), Positives = 33/81 (40%)
 Frame = +3

Query: 411 PVPCKWTKYIPYNWPSSVIPRRLSKKTTTVQSLNDTGSILPENTFTCTLMYHCSLTITTF 590
           P P   T        +S+IP   S  TTT     +T S LP +  +   +   S+  T+ 
Sbjct: 190 PPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTS- 248

Query: 591 HLITSVLEPKSPSRIPLGERT 653
            +ITS   P + S   L   T
Sbjct: 249 -IITSTSTPVTVSSSSLSSFT 268



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 14/182 (7%)
 Frame = +3

Query: 132 SRS*LEDSVLCSSIVTMQTEQFSVTSAVPSSRVPRTLWKISREEFRST*ATSI*LFTP-Y 308
           S S    SVL +SI+T  +   +V+S+  SS  P     ++     +T  ++    +P Y
Sbjct: 236 SASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFY 295

Query: 309 SMMPLVLEALSLSGTPLRRQDSKTALILDRS------TGTPV-PCKWTKYIPYNWPSSVI 467
           S   ++  ++  S +      S     L  S      TGT      +T   P+   SSVI
Sbjct: 296 SNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVI 355

Query: 468 PRRLSKKTTTVQSLND--TGSILPENT-FTCTLMYHCSLTITT---FHLITSVLEPKSPS 629
           P  +    ++  S N   T ++   NT  T T     S T T+   F+  +SV+    PS
Sbjct: 356 PTSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYSNSSVIPTSVPS 415

Query: 630 RI 635
            +
Sbjct: 416 SV 417


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 515 YWLNSAGEYVYVHPDVPLFVDYHNLSPNHLCFGAQI 622
           +W  S  +    +PD P  ++Y  + PN +  GA I
Sbjct: 301 FWERSLQKANICNPDYPNLLEYFQMQPNFILDGATI 336


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 83  SVSISSPRADDVILTLEPQLTGGFSVVLIDSNDADR 190
           ++SIS   A  + L L P+ +G  +V L+   +ADR
Sbjct: 179 AISISYSTATSIQLCLPPEYSGNSNVSLLSLMEADR 214


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +2

Query: 380 CIDFGSK-HWY-AGPMQVDQIYPVQLAEQRYSA---SIIKENDNGAI--AERYWLNSAGE 538
           C   G K HW  A P   D  Y  +   +R +    S +K  +  A   A    +N+ G+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPAEGDAANIMINAEGD 244

Query: 539 YVYVHPDVPLFVDYHN 586
           YV V PDV  +  Y +
Sbjct: 245 YVVVQPDVASWETYQS 260


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 359 PQTRLEDCIDFGSKHWYAGPMQVDQIYP 442
           P T   DC  F   + Y  P   DQI+P
Sbjct: 534 PGTTNSDCSGFAENNIYVTPYMDDQIFP 561


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 274 VDLNSSLDIFHSVRGTRDDGTADVTENCSVC 182
           ++ + ++D   +VRG + D +  V+  CS C
Sbjct: 213 IEASITIDFMEAVRGAKKDLSYSVSSTCSSC 243


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 480 SKKTTTVQSLNDTGSILPENTFTCTLMYHCSLTITTFHLITSVLE----PKSPSRIPLGE 647
           +K   T++   + G+++P    T  +    + +I+T  L + +LE    P  P+ + L E
Sbjct: 167 TKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHL-LDE 225

Query: 648 RTLYLPMTCGFF 683
           +T+Y     G F
Sbjct: 226 KTVYHIQPSGRF 237


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 275 VGDVNLTVHTLFDDASGARGIKFKWNAT 358
           V D+N T    + D+S A G++ KW  T
Sbjct: 410 VSDLNSTELPFWSDSSHAGGVRIKWIKT 437


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 390 LDRSTGTPVPCKWTKYIPYNWPSSVIPRRLSKKT 491
           +D     P  C W   +P +WPS    R   K++
Sbjct: 414 IDPDIEDPSKCHWHSEVPESWPSPDQLREYEKES 447


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  TQDNLSADVAGGTSSLGQRLHILTT 105
           T+DN + DV+   +SLGQ    LTT
Sbjct: 311 TEDNYNKDVSDAQNSLGQSAVDLTT 335


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 422 QVDQIYPVQLAEQRYSASIIKENDNGAIAERYWLNSAGEYVYVHPDVPLFVDYHNLS 592
           ++  IYPV  +   Y +  I      A+  +YWL+ A          PL +++ N S
Sbjct: 116 ELSAIYPVSGSFYTYFSKFIDPAWGFAVGIQYWLSFAVTVPLELTVAPLIINFWNAS 172


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 442 GIYLVHLHGTGVPVLRSKINAVFES 368
           GI L+HLHG      R+++ A F S
Sbjct: 309 GISLLHLHGKQKQTTRTEVTAKFTS 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,088
Number of Sequences: 5004
Number of extensions: 67396
Number of successful extensions: 216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)