Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16o08f
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611... 30 1.7
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 30 2.2
02_01_0705 - 5259949-5263887,5266207-5266509 30 2.2
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 29 3.9
06_02_0069 - 11126235-11127538,11128361-11128421 29 5.2
05_05_0302 - 23944802-23945857 29 5.2
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 28 6.9
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226... 28 6.9
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 28 6.9
>10_08_0745 -
20260136-20260236,20260890-20260937,20261025-20261165,
20261358-20261603,20261744-20262583,20263253-20263286
Length = 469
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 306 YSMMPLVLEALSLSGTPLRRQDSKTALILDRSTGTPVPCKWTKYIPYNWPSSVIPRRLS 482
Y + + L+ SL G LR T ++ D +TG C + I WPSS + LS
Sbjct: 360 YELCDIDLKDFSLQGCLLR--SLPTDIVFDNATGISFTCDLSDNIAAPWPSSSSVQSLS 416
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 465 IPRRLSKKTTTVQSLNDTGSILPENT--FTCTLMYHCSLTITTFHLITSVLEPKSPSRIP 638
+P + + + + S + +LP+ T FT CS + TT+ L + ++ K +P
Sbjct: 219 VPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCTAVQNKGCPSVP 278
Query: 639 LGERTLYLPMTCG 677
L TL L T G
Sbjct: 279 LCNGTLKLGETNG 291
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 562 YIRVHVNVFSGRIEPVSFSDCTVVVFFD-NRRGIT 461
Y+ +H N FSG I P SFS+ + +++ D N +T
Sbjct: 286 YLDIHTNAFSGSI-PASFSNLSRLLYLDANNNNLT 319
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +2
Query: 392 GSKHWYAGPMQVDQIYPVQLAEQRYSAS-IIKENDNGAIAERYWLNSAGEYVYVHPDVPL 568
GS PM + P ++ +RY A+ + I + A E+ D PL
Sbjct: 60 GSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKEDRPL 119
Query: 569 FVDYHNLSPNHLCFGAQIAEPY 634
FV + P+ L A+I EPY
Sbjct: 120 FVQFCANDPDILLQAAKIVEPY 141
>06_02_0069 - 11126235-11127538,11128361-11128421
Length = 454
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 401 HWYAGPMQVDQIYPVQLAEQRYSASIIKENDNGAIAERYWLNSAGE---YVYVHP-DVPL 568
+WY+G Q+++ + LA ++ S N+N + + L + Y+Y +P D +
Sbjct: 101 YWYSGTNQINKKPELDLANKKLSR---HNNNNPSHGHDHILLDKMKLLRYIYSNPADRHV 157
Query: 569 FVDYHNLSPNHLCFGAQ 619
VDY + NH+ F +
Sbjct: 158 RVDYDGHNDNHMVFNTE 174
>05_05_0302 - 23944802-23945857
Length = 351
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +2
Query: 287 NLTVHTLFDDASGARGIKFKWNATPQTRLEDCIDFGSKHWYAGPMQVDQIYPVQLAEQRY 466
NL V D G+ KW A + L++C+ G QVD+ PV + Y
Sbjct: 134 NLRVELPSGDVGTEEGVLLKWRAEYGSTLQNCVILGG-------TQVDR-KPVGAEHELY 185
Query: 467 SASIIKENDNGAIAERYWLN 526
S DNG++ E ++ N
Sbjct: 186 S------EDNGSMPESFYTN 199
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 728 PNSWPLHVYVPSLRLKETTRHRQVQCAFS*RNTA 627
P +WPL VY+ S++ +TR + C R A
Sbjct: 210 PLTWPLGVYIVSVQCSRSTRVSRTFCRIQARGVA 243
>11_01_0302 +
2261489-2261738,2261917-2262064,2262124-2262205,
2262501-2262566,2262609-2262686,2262794-2262808,
2263618-2263764
Length = 261
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 573 LTITTFHLITSVLEPKSPSRIPLGERTLYLPMTCGFFQT-*RRHINMQWPTI 725
L + H+ITS++ SPSR T LP TC F Q+ + QW I
Sbjct: 185 LLLVNCHIITSLMLFLSPSRFVTALST--LPATCDFVQSYDSSDVKSQWHEI 234
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 212 RTIVSSSTYTVEDIEGGVQINVGDVNLTVHTLFDDASGARGIKFKWNATPQTRLEDCIDF 391
+T+ S+ + E++ G QIN+GDV+ + + S A K N L+ ++
Sbjct: 4 KTLRESAARSAENVAIGPQINMGDVDFDLKSSLIIMSQASPFCSKPNEDANAHLQQFLEI 63
Query: 392 GSKHWYAGPMQVD-QIYPVQLAEQ 460
S + G V +++P L Q
Sbjct: 64 CSTYTIKGSGAVRLRLFPFSLLVQ 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,415,144
Number of Sequences: 37544
Number of extensions: 462113
Number of successful extensions: 1428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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