Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16o08f
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 29 3.0
SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1) 28 9.2
SB_11720| Best HMM Match : SPC25 (HMM E-Value=3.2) 28 9.2
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 28 9.2
>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 52.0 bits (119), Expect = 5e-07
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Frame = +2
Query: 374 EDCIDFGSKHWYAGPMQVDQIYPVQLAE---QRY--SASIIKENDN----GAIAERYWLN 526
+D HW+ G Q +P++ AE Q Y S +I+ N G + ERYWLN
Sbjct: 168 QDDFRLDKMHWFGGSELYMQAWPLEKAEINMQPYIPSDTILNFLSNRTAYGGVLERYWLN 227
Query: 527 SAGEYVYVHPDVPLFVDYHNLSPNHLCFGAQIAEPYSSRRTHTVLAYDVWFLSNVKKAHK 706
S G + V +VPL + ++ + N A E Y L+Y V N+K H+
Sbjct: 228 SNGIAIVVDEEVPLLIAINDSNNNKFSMKASWVE-YGKPVATVQLSYRVCIGENIKDVHQ 286
Query: 707 HAVAN 721
+ + N
Sbjct: 287 YVMRN 291
>SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 330 EALSLSGTPLRRQDSKTALILDRSTGTPVPCKWTKYIPYNWPSSVIPR-RLSKKTTTVQS 506
E+ + P RQ + L++D PV T P+N ++ PR RLS++ T +
Sbjct: 282 ESTVTTSYPWNRQSQRVTLVIDSHNELPVESTVTTSYPWNRATAKYPRNRLSQRVT--RE 339
Query: 507 LNDTGSILPENTF 545
+N +L E+TF
Sbjct: 340 INIPSELLEESTF 352
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -2
Query: 562 YIRVHVNVFSGRIEPVSFSDCTVVVFFDNRRGITLLGQLYGIYLVHLHGTGVPVLRSKIN 383
++R H ++ + R EP F D V D R L L+ H G P++R IN
Sbjct: 592 FLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYALLPLWYTLFFHASQDGTPIIRVIIN 651
Query: 382 AV 377
V
Sbjct: 652 VV 653
>SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +3
Query: 402 TGTPVPCKWTKYIPYNWPSSVIPRRLSKKTTTVQSLNDTGSILPENTFTCTLMYHCSLTI 581
T TP P P+N +S IPR L + S + SI P T H +L
Sbjct: 249 TTTPTPPAIPFITPFNHNTSTIPRILHANWEIISSDQELSSIFPSPP-TTAFTRHKNLKD 307
Query: 582 TTFH 593
T H
Sbjct: 308 TLVH 311
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 9.2
Identities = 39/147 (26%), Positives = 52/147 (35%), Gaps = 4/147 (2%)
Frame = +3
Query: 177 TMQTEQFSVTSAVPSSRVPRTLWKISREEFRST*ATSI*LFTPY-SMMPLVLEALSLSGT 353
T T S TS P+ T S + ST TS +TP S P + S T
Sbjct: 21 TSTTSYTSTTSYTPTPSYTPTTSYTSTTSYTST--TS---YTPTPSYTPTTSYTTTTSYT 75
Query: 354 PLRRQDSKTALILDRS-TGTPVPCKWTKYIPYNWPSSVIPRRLSKKTTTVQSLNDTGSIL 530
+ T+ S T T T Y +S + T+ S T S
Sbjct: 76 STTSYTTTTSYTPTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYT 135
Query: 531 PENTFTCTLMYHC--SLTITTFHLITS 605
++TCT Y C S T TT + T+
Sbjct: 136 STTSYTCTTSYTCTTSYTCTTSYTSTT 162
>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
Length = 159
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 441 PYNWPSSVIPRRLSKKTTTVQSLNDTGSILPENTFTCTLMYHCSLTITTFHLITSV 608
PY+ P V P + T V + T + P + C YH + +T +H+ SV
Sbjct: 28 PYHVPDCVTPYHV---TYYVTPYHVTYCVTPYHVTYCVTPYHVTYYVTPYHVTYSV 80
>SB_11720| Best HMM Match : SPC25 (HMM E-Value=3.2)
Length = 326
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 490 VFFDNRRGITLLGQLYGIYLVHLHGTGVPVLRSKI 386
+FF + +T++ LY +Y++ L G+P LR+ I
Sbjct: 275 IFFTAKNALTVVIMLYRLYILVLDMYGLPHLRAAI 309
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 492 TTVQSLNDTGSILPENTFTCTLMYHC--SLTITTFHLITS 605
T+ S T S P ++TCT Y C S T TT + T+
Sbjct: 81 TSTTSYRSTPSYTPTPSYTCTTSYTCTTSYTSTTSYTCTT 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,333,654
Number of Sequences: 59808
Number of extensions: 521451
Number of successful extensions: 1544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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