Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o08f
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025458-3|AAB70976.1|  612|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    28   6.1  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   6.1  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF025458-3|AAB70976.1|  612|Caenorhabditis elegans Hypothetical
           protein C01B12.3 protein.
          Length = 612

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 239 TVEDIEGGV-QINVGDVNLTVHT-LFDDASGARGIKFKWNATPQTRLEDCI 385
           + +D E G+ + N  D N  +H+   D ASG       W++ PQT+LE+ +
Sbjct: 457 SAQDFENGMAKKNSIDENADIHSNRLDQASGTPKSGRLWSSMPQTQLEEML 507


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 400 LRSKINAVFESCLRSGVPLKLNASSTRGIIE*GVNSQI 287
           LR     V++  L++G PLK N SST  ++   +NS +
Sbjct: 235 LRKSRKYVYDENLKAGNPLKNNLSSTSSLLLSSINSNL 272


>Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical
           protein B0284.4 protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 489 TTTVQSLNDTGSILPENTFTCTLMYHCSL 575
           TT   SLN  G+ L ENTFT  + Y+  L
Sbjct: 327 TTVRNSLNQFGASLQENTFTNCIGYYTDL 355


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 444 YNWPSSVIPRRLSKKTTTVQSLNDTGSILPENTFTCTLMYHCSLTITTFHLITSVLEPKS 623
           Y W    +    +K TTT  +   T +I P  T + T     +  +TT   +TS  EP +
Sbjct: 246 YEWKKCGLVPETTKPTTTTPTTTTTTTI-PSTTSSTTSTSTTTSVVTT-TTVTSTTEPTT 303

Query: 624 PSRIPLGERTL 656
            +  P    T+
Sbjct: 304 STSTPTTTTTM 314


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
 Frame = +2

Query: 503  IAER-YWLNSAGEYVYV-----HPDVPLFVDYHNLSPNHLCFGAQIAEP---YSSRRTHT 655
            IA+R YW ++  + ++         V +F D   L   H CFG  + E    +S  RT+T
Sbjct: 1531 IAKRVYWADAKSDSIHTITYDGRDHVIVFRDPERLG--H-CFGIDVYEGHVYFSDWRTNT 1587

Query: 656  VLAYDVWFLSNV 691
            +   D WF SNV
Sbjct: 1588 ISKVDKWFGSNV 1599


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 253 DIFHSVRGTRDDGTADVTENCSVCIVTIDEHNTE 152
           D    +R   DDG  D+ ENC   I  +DE   E
Sbjct: 484 DPIDELRKNIDDGLGDLFENCMFYICGVDESRME 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,689,520
Number of Sequences: 27780
Number of extensions: 377409
Number of successful extensions: 1036
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)