Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o08f
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.3  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 7   PLELDDGCTQDNLSADVAGGTSSLGQRLHILTT 105
           P+E+DD   +  + +D    T  + ++LH+  T
Sbjct: 66  PVEVDDDLIKAIIDSDRHSTTREIAEKLHVSHT 98


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 239 CTWNSRRWYG 210
           CTW +R W G
Sbjct: 301 CTWAARPWQG 310


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 239 CTWNSRRWYG 210
           CTW +R W G
Sbjct: 301 CTWAARPWQG 310


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 239 CTWNSRRWYG 210
           CTW +R W G
Sbjct: 301 CTWAARPWQG 310


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 451 GRAALFRVDYQRKRQRC 501
           GR  LF +DY    ++C
Sbjct: 546 GRTYLFDLDYNESEEQC 562


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 577 LSQPFT*SPLFWSP 618
           L+ PF  SP  WSP
Sbjct: 509 LAAPFNASPTTWSP 522


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 513 DTGSILPENTFTCTLMYH 566
           D  S+L ENT TC    H
Sbjct: 378 DKQSLLKENTVTCQEAMH 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,717
Number of Sequences: 438
Number of extensions: 4473
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)