Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o07f
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.47 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 650 GLDPAGPLWNTNSNRLRP-GDGVYV--EAIHTDGSTSGL 757
           G  P G LWN N+ RL P  D  Y   E I  +G  S L
Sbjct: 802 GEKPIGILWNMNNKRLDPKSDSRYTIREEILANGVLSDL 840


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 292 IHYQSLASSCVAPCKKKILIGIIPVHLIQQ 203
           +H++S  +  +AP  K++ I I+P  L+ +
Sbjct: 331 VHFRSPQTHKMAPWVKRVFIHILPRLLVMR 360


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 292 IHYQSLASSCVAPCKKKILIGIIPVHLIQQ 203
           +H++S  +  +AP  K++ I I+P  L+ +
Sbjct: 331 VHFRSPQTHKMAPWVKRVFIHILPRLLVMR 360


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 292 IHYQSLASSCVAPCKKKILIGIIPVHLIQQV 200
           +HY+  ++  +AP  +KI I  +P  L+ +V
Sbjct: 322 VHYRKPSTHKMAPWVRKIFIRRLPKLLLMRV 352


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = -1

Query: 292 IHYQSLASSCVAPCKKKILIGIIPVHLIQQ 203
           +H++S  +  +AP  +++ I ++P  L+ +
Sbjct: 327 VHFRSPQTHVMAPWVRRVFIHVLPRLLVMR 356


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 338 TVVIVHGWLSTRNTEPNPTIRNAF 409
           T  IV  WL   N+  NP I   F
Sbjct: 657 TAFIVTSWLGYMNSFVNPVIYTVF 680


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,780
Number of Sequences: 438
Number of extensions: 5410
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)