Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o06r
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    84   2e-17
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   4.5  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   6.0  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   6.0  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   7.9  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 713

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 80/279 (28%), Positives = 123/279 (44%), Gaps = 17/279 (6%)
 Frame = -1

Query: 858  RCANRIGGAKFSIDGTTYQLANNIG-KDHLHGGINGFNKANWNSTV-----DGTKVIFSY 697
            R ANRI   +F +DG  Y L  N   K  LHGG NGF+K  +   +     D   + F  
Sbjct: 423  RFANRIANGQFEVDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFIL 482

Query: 696  LSKDGEEGYPGDLITNITYEVTEDNALHVDFMS-----XXXXXXXXXXXNHSYFNLAGHE 532
            + KDG  G+P DL T + Y + ++N+L +++ S                NHSY+NLA   
Sbjct: 483  VDKDGNNGFPSDLETLVKYTI-KNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPN 541

Query: 531  TGVQEIYNHIFVINADKITETDS-GSIPTGGFISVGGTPYDLRVPTKLGDVINKTGNGFD 355
               + I   I     +   + +S  S+PTG  +       D+  PTKL   I+       
Sbjct: 542  ---KTIDGTIIKSTTNVYLKVNSETSLPTGDIVE---WQNDITKPTKLDPNISFDNCFIV 595

Query: 354  D----NFCISTYTNKSLNFVSRILHPSSGRTLEVYSDQPGVQFYTSNSLPAPQESALVGK 187
            D     FC+ T    SL  +  ++HPS    L V + +P  Q YT +           G 
Sbjct: 596  DREASKFCLDT-RKYSLKNIVEVIHPSVPVKLVVSTTEPAFQLYTGD-----------GN 643

Query: 186  QGVGYRRHGAFCLETQNYPDAVHHTNFPR-AVLYPGEVY 73
                ++    FC+ET  + +A+++  + +  +L  GEVY
Sbjct: 644  DICEFQSRSGFCVETGRFINALNNEKWSKQVILRKGEVY 682


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 311 KFNDLFVYVEMQKLSSKPFPVLFMTS 388
           + N +  Y+E QK SS+P P  + T+
Sbjct: 747 RMNQVLQYLEEQKTSSEPLPASYSTA 772


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 487 SVYNKDMVVDLLDTSFVASQIKIRMVCQIYN 579
           +VYN + V +LL  + +A Q+ + +VC  Y+
Sbjct: 749 NVYNPEKVKNLLKEAKLADQLPLILVCDRYD 779


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 294 EGSETRNLMIYLCTLR 341
           EG+   NLM+++CTLR
Sbjct: 118 EGTANMNLMLFMCTLR 133


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 695 R*LNITLVPSTVEFQFALLNPLIPPCK*SFPMLLAS**VVPSMLNFAPPILLAQ 856
           R LNI+++PS V     L+N L  P    +  ++AS   VP +LN  P +  +Q
Sbjct: 362 RILNISVIPSDVHSPPKLINYLTSPDTVIWSAVIAS-CAVPGILNPIPLMTRSQ 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,585
Number of Sequences: 5004
Number of extensions: 76920
Number of successful extensions: 219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)