Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16o02f
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          27   0.14 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.14 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.1  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 211 YFLSELNLTFWFRYFWQYTAERLNYFQK--FYSHF-DLLRFNYP 89
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 211 YFLSELNLTFWFRYFWQYTAERLNYFQK--FYSHF-DLLRFNYP 89
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -1

Query: 667 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFTGFTIHSSHYIN 503
           + ++R    + IS L    +  HN   +K  Y+N+  ++  N+     + ++ IN
Sbjct: 71  TERERSREPKIISSLSN--KTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIIN 123


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
 Frame = -2

Query: 654 EIPEPNPYPFWSNSSSN------NTIRPATNSC 574
           E P+ NPYP W  +  N      N IR   ++C
Sbjct: 88  ESPKLNPYPNWEMNDINKIDSIINIIRVRVDAC 120


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 718 NSGW*KCLPYNGFTDVC 668
           NSG   C+P+  +T VC
Sbjct: 143 NSGTILCVPFTTYTPVC 159


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 618 NSSSNNTIRPATNSCMIMRRHTPAPISLG 532
           N  +NN      N C++  + +P  ++LG
Sbjct: 473 NEGNNNMAATYMNECLLNIQKSPRTLTLG 501


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 205 LSELNLTFWFRYFW 164
           L +  L F+FR FW
Sbjct: 54  LMDFTLDFYFRQFW 67


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 705 ENAFHTMVSQMFVAINREIPEPNPYPFWSNSSSNNTIRPAT 583
           E  +   V   FV  + + P P P P      + +T+R  T
Sbjct: 355 EEEYSPSVQHEFVTFDLDEPLPPPPPIRGGEWTFDTLRKTT 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,001
Number of Sequences: 438
Number of extensions: 5613
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)