Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16n24f
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.28
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 30 0.37
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.37
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.49
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.49
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.49
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.86
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 29 0.86
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.6
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.6
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 4.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 6.0
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 6.0
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 6.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 8.0
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -1
Query: 662 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSD 483
TP S + + S+T +SSS+T ++ + A ++ S+ ++ + D K S+
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSN 207
Query: 482 T 480
+
Sbjct: 208 S 208
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = -1
Query: 641 IQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDG 462
I + S +S +++ + + + ++ STPI++S+ + +S + S G
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSG 192
Query: 461 SVV*TVGKT 435
S+ KT
Sbjct: 193 SISSADAKT 201
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 29.9 bits (64), Expect = 0.37
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 683 VQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPD-Q 507
V G TTP + + + S SLSS+ TDN+ A V T +AASV D
Sbjct: 146 VYGDSATTPAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTD 200
Query: 506 KVAKELSDTGNSIDGSV 456
+ +S +S SV
Sbjct: 201 SASATISSVVDSATSSV 217
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.9 bits (64), Expect = 0.37
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = -2
Query: 616 LPPACRPALPTTCAPKLKPIKWTRPQLPP----PLLMSQTKKLPRNCPTLGTPLTAVLYR 449
LPP PA P + P +PP PL+ + T P + P + P TA +
Sbjct: 210 LPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNV-LPFTAAQHF 268
Query: 448 PLARPRQSTNNVAVGDG 398
P P NV +G G
Sbjct: 269 P-GMPAMPMMNVPMGPG 284
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 616 LPPACRPALPTTCAPKLKPIKWTRPQLPPP 527
L P+ P LP + +L P+ TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.49
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Frame = -2
Query: 694 PALRFRAWLLPPHLGPAG---SKPV-TLLGLPPACRPALPTTCAPKLKPIKWTRPQLPP- 530
PA+ R+ P LG A + PV T LPP+ P+LP + P L P LPP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 529 -PLLMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTNNVAVGDGQQGGAD 380
P+ +P P L A P P ++A Q G A+
Sbjct: 453 APIAPPLPAGMPA-APPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGRAN 502
Score = 29.1 bits (62), Expect = 0.65
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Frame = -2
Query: 664 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI----KWTRPQL--PPPLL 521
PP P+ G +P L + PPA PA+P AP L P+ + + P + PP L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 520 MSQTKKLPRNCPTLGTPLTAVLYRPL 443
S LP + P P+ A PL
Sbjct: 425 PSAPPSLPPSAPP-SLPMGAPAAPPL 449
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.49
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 697 APALRFRAWLLPPHLGPAGSKPVTLLGLPPACR-PALPTTCAPKLKPIKWTRPQLP-PPL 524
APAL LPP P V L P+ P +P T AP L P + P +P PP+
Sbjct: 450 APALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAP-LPPTTFAPPGVPLPPI 508
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 0.86
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Frame = -2
Query: 607 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTP--LTAVLY 452
A P +P T PK P PPP L Q T +LP RN LG+ +
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPA 277
Query: 451 RPLARPRQSTNNVAVGDGQQGGADHGVHSGVSVAVPA 341
P PR TN G H S S + P+
Sbjct: 278 TPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPS 314
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 649 PAGSKPVTLLGLPPACRPALPTTCAPKLK-PIKWTRPQLPPP 527
P S P +++ PP+ +P P+ AP P + P PPP
Sbjct: 156 PTVSAPNSMVSPPPSFQP--PSAAAPATSLPSDYNPPPPPPP 195
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 28.7 bits (61), Expect = 0.86
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 341 GW-NSNGNSAVNTMIRPALLAVSDCNV---ICGLAWSCQRSIQHCRQWSS 478
GW NG SA + +R A+ A+++ N+ + GL W I R+WS+
Sbjct: 252 GWLGFNGGSAYGSNLRAAM-AITNTNLAGAVAGLVWVIYDYIFRTRKWST 300
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 664 PPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCP 485
PP P+G+ PV + PA + P KP P +PPP S+ +P+ P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV-PPVPPP---SEAPPVPK--P 1203
Query: 484 TLGTP 470
++G P
Sbjct: 1204 SVGVP 1208
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 343 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 236
A+ + E +++VVRV R D + +N + + TSG
Sbjct: 64 ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 664 PPHLGPAGSK-PVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPP 530
P P SK P LPP +PA P P + P +PP
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 436 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 555
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 131 SKRIGLHLPHSDCCLQGSW 75
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 227 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 400
W+FT ++N QV NG + S +N + PL +G S+G+ + + LL
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481
Query: 401 VSDC 412
+ C
Sbjct: 482 RTQC 485
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 640 SKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTA 461
S PV LL P+LP PK+K + P S + P +G+P TA
Sbjct: 321 SSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-PASSTTSARDQTPSTPKDVGSPSTA 379
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -1
Query: 617 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 471
S TS+SSS ++N + +VDS P + V D K KE S+ G S
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKS 414
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 95 SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 205
S Y +G+S V + G+GV H+V + E + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -2
Query: 625 LLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTP 470
+ G P PA + ++P ++ LPPP K LP +L P
Sbjct: 21 IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPP 72
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 284 NSIRNSNYNGNLPLFVIVHGWNSNGN 361
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 424 WTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTLSVT 594
WT + T+ + + SS A+ WS SS + + +T +++ T SV+
Sbjct: 928 WTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVS 984
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,842
Number of Sequences: 5004
Number of extensions: 70428
Number of successful extensions: 295
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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