Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16n08f
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.18 
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    28   1.3  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    27   3.0  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   4.0  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   5.2  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   6.9  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   6.9  

>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 240 VETNASNAQKSEKDKDIPFSRYLRKVVKTSSRVIRALSI-AAFVILLTVVAFMLYFTIMA 416
           ++ NA       +D+ +PFSRY  K+ KT++  + A+ +   F I L ++       I A
Sbjct: 368 MQANARTIWAFSRDQALPFSRYWYKINKTTTTPVIAVWLNVVFCIALNLIGLGSIEAIEA 427

Query: 417 NFS 425
            FS
Sbjct: 428 IFS 430


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 115 VCTPRLGILVQKMKQNSQNDL*NIWKQTTYRHVFSNA 5
           +  P LGI    ++ NS+NDL N  K+  YR V  ++
Sbjct: 216 ISLPNLGIFTHILR-NSRNDLSNYLKKRPYREVIESS 251


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +3

Query: 111 HTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDI 290
           H E+       +++ N  +V   S + + IQ   FN       +    S+A+K EK + I
Sbjct: 213 HPEANQIIKRALLLSNGLSVQPKSVEESQIQ---FNELAQKFGIPLELSSAEKLEKLRAI 269

Query: 291 PFSRYLRKVVKTSSRVIRALSIAAFV 368
           PF      ++       RA++   FV
Sbjct: 270 PFQDLADNILNLRLHTFRAVTDGDFV 295


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 424 PPKTATVPLLTSGI----FQGCCGKPDGPTIRSAQQLSILYDWS 543
           P   AT P LT+          C  PDG  I +A + SI+Y++S
Sbjct: 326 PLPAATTPELTTSKRDFGVTNVCTSPDGERIYAASRDSIIYEYS 369


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = -2

Query: 526 SKAVVRCVLLAHLACHNTLEISHS*GAVR-SPSSEEKLAMIVKYSMKATTVKSITNAAI- 353
           SK +VR ++LA   CHN        G V    +S +++A++   S     + + T  AI 
Sbjct: 455 SKTLVRNLVLALSLCHNVTPSKGHDGVVSYQAASPDEVAIVKWTSTLGLVLTNRTRDAIT 514

Query: 352 -DNALITLLDVFTTFRR*RENGISLSFSD 269
            +N +  +L++F      +  GI +   D
Sbjct: 515 LNNNVYKILNIFPFKSETKRMGIIVQSPD 543


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 359 SYRQRSNHPARCLHYFSQVARKRYIFVFFGFLCVRSIGFNISRAF 225
           +Y Q  NH A    +  ++  K ++ V   F+ + SI F    AF
Sbjct: 435 TYEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFGYWPAF 479


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 439 TVPLLTSGIFQGCCGKPDGPTIRSAQQLSILYDWSLSSTPSHQTVSHSSLAWRHYV 606
           T+P  +SG  +     P  PT  SA  +S+    S  ST   +T S+     R +V
Sbjct: 116 TLPTQSSGEEEAKYSHPGAPTATSADSISMESRPSNLSTSLSKTTSYPQFQVRQFV 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,517
Number of Sequences: 5004
Number of extensions: 71719
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)