Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16n08f
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0700 - 5413026-5413122,5413226-5413356,5413840-5413905,541... 31 0.77
10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617... 31 1.3
01_01_0098 + 744582-745380,746107-746130,746500-747569 31 1.3
01_02_0013 + 10162478-10163581 30 2.4
04_03_0096 + 11158108-11159083,11159116-11159744 29 5.4
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807... 28 7.2
04_04_0440 - 25219961-25221529 28 7.2
01_06_1411 + 37127098-37128279 28 7.2
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 28 7.2
03_04_0073 + 17059358-17059921 28 9.5
>01_01_0700 -
5413026-5413122,5413226-5413356,5413840-5413905,
5413986-5414037,5414496-5414581,5414682-5414851,
5414974-5415057,5415302-5415372,5415461-5415621
Length = 305
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 99 RRGVHTESG-PSTTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQK 269
RR V E + A+V++ +D + + D+ S+ T TEG + + + S +K
Sbjct: 82 RRAVSLEEEYDAAGAEVVLGDDEDASKQEEEEDIPSMDTLDIGKTEGIKSIPSYFSAGKK 141
Query: 270 SEKDKDIP 293
+E+++DIP
Sbjct: 142 AEEEEDIP 149
>10_08_0918 -
21560635-21560795,21560847-21560935,21561696-21561760,
21561841-21561892,21562271-21562356,21562457-21562626,
21562748-21562831,21563284-21563354,21563461-21563621
Length = 312
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +3
Query: 99 RRGVHTESG-PSTTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQK 269
RR V E + A+V++ +D + + D+ S+ T TEG + + S +K
Sbjct: 82 RRAVSLEEEYDAAGAEVVLGDDEDASKPEEEEDIPSMDTLDIGKTEGINSIPSYFSAGKK 141
Query: 270 SEKDKDIP 293
+E+++DIP
Sbjct: 142 AEEEEDIP 149
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 333 RVIRALSIAAFVILLTVVAFMLYFTIMANFSSE 431
+VI A S+AAFV + VVA +LY ++ ++ E
Sbjct: 271 KVIAATSVAAFVAVSLVVATVLYLSLKQRYNEE 303
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 585 ACVAALRNLQSYFLINLHYDIPYNFMIGNDGRV 683
AC+AALR L S +++LH + P++ + DG +
Sbjct: 180 ACLAALRGLHSRGVVHLHLN-PFHILADADGNI 211
>04_03_0096 + 11158108-11159083,11159116-11159744
Length = 534
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 475 CCGKPDGPTIRSAQQLSILYDWSLSSTPSHQTVSHSSLA 591
CC D I +++ +I Y ++S PS+ H SLA
Sbjct: 266 CCHNVDNVAIDASELTTIAYRGAVSDDPSYTLSMHGSLA 304
>07_03_0736 -
21079880-21080185,21080231-21080429,21080531-21080768,
21080888-21081098,21081181-21081320,21081400-21081537,
21086208-21087036
Length = 686
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 461 GYFKGVVASQMGQ--QYAAHNSFRSYTTG 541
G F G+VA+ + YAAHNS R Y +G
Sbjct: 154 GRFNGMVAALVNATADYAAHNSTRRYASG 182
>04_04_0440 - 25219961-25221529
Length = 522
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 129 STTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQKS 272
S + D+++ D A +G + +Q ++ D+ TNASNAQ S
Sbjct: 449 SISLDIVLERDAGGAIENGGQEAGQVQITELTDQMAAMDLPTNASNAQSS 498
>01_06_1411 + 37127098-37128279
Length = 393
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 512 HNSFRSYTTGHYPAHRHTRLFH 577
H+ F Y GH+P H H L H
Sbjct: 100 HHQFPVYRRGHHPDHDHDPLLH 121
>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 72 CFIFWTKMPRRGVHTESGPSTTADVIMLNDRNVATVS 182
C+ FW RR HTE S+ AD + R +S
Sbjct: 1272 CYCFWRNKARRKQHTEMEKSSDADDLPFRVRKSPALS 1308
>03_04_0073 + 17059358-17059921
Length = 187
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 706 WSVPIPSCITDVHWGLGFVG 765
W VP P C+ D + G GFVG
Sbjct: 5 WGVPYPDCVLD-NAGAGFVG 23
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,528,584
Number of Sequences: 37544
Number of extensions: 493892
Number of successful extensions: 1502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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