Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16n08f
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 29 4.9
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 29 4.9
Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical pr... 28 6.5
X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein ... 28 6.5
AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine r... 28 6.5
Z81132-5|CAB03436.1| 345|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 8.6
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 8.6
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 114 TESGPSTTADVIMLNDRNVATVSGDVAS-IQTSQFNATE---GPRDVETNASNAQKSEKD 281
T TT V + +TVSGD S TS+F TE GP + S++++S+ D
Sbjct: 243 TTESDGTTTTVFTTTKDDTSTVSGDSNSGSSTSEFKNTETTTGPGSTVSEPSSSERSDLD 302
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
F22B5.7 protein.
Length = 1415
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 418 TFPPKTATVPLLTSGIFQGCCGKPDGPTIRSAQQLSILYDWSLSSTPSHQTVSHSSLA 591
T PPKT++ L +F G+ DG + + Q + WS ++ +T S SS++
Sbjct: 922 TMPPKTSSRYALRDDVFSSAMGRLDGTQVITPPQ--PVNGWSNNTFQMKRTNSSSSIS 977
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 418 TFPPKTATVPLLTSGIFQGCCGKPDGPTIRSAQQLSILYDWSLSSTPSHQTVSHSSLA 591
T PPKT++ L +F G+ DG + + Q + WS ++ +T S SS++
Sbjct: 922 TMPPKTSSRYALRDDVFSSAMGRLDGTQVITPPQ--PVNGWSNNTFQMKRTNSSSSIS 977
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 255 KHWFQHLEGLRLH*IVKFESTRRLPTQLLHF 163
+ WFQHL + ST LP Q+L F
Sbjct: 46 ERWFQHLSSFEMTAETDVRSTENLPQQILDF 76
>Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical
protein C08B11.1 protein.
Length = 799
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 558 VTPDCFTFVACVAALRNLQSYFLINLH 638
++ C T ++C+++LRNL+ + NL+
Sbjct: 190 ISSTCVTDISCISSLRNLEVLIMYNLN 216
>X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein
protein.
Length = 799
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 558 VTPDCFTFVACVAALRNLQSYFLINLH 638
++ C T ++C+++LRNL+ + NL+
Sbjct: 190 ISSTCVTDISCISSLRNLEVLIMYNLN 216
>AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine
receptor, class j protein44 protein.
Length = 350
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 522 FDPIRLVIIQHTVTPDCFTFVACV 593
F+ +R +I+Q TVTP CF+F C+
Sbjct: 244 FELLRALIVQ-TVTPICFSFSPCL 266
>Z81132-5|CAB03436.1| 345|Caenorhabditis elegans Hypothetical
protein T26E4.7 protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 567 DCFTFVACVAALRNLQSYF-LINLHYDIPYNFMIGNDGRVYEGRGWGMVGAHTFM 728
D FTF AC+ +L + + F + + + Y F+ + G GW G T M
Sbjct: 187 DLFTFEACIKSLFGVGTRFGKVRIMKKVVYLFIFCFKNTQFRGTGWARDGWLTSM 241
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = +3
Query: 87 TKMPRRGVHTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQ 266
T P + TES STT+ + + ++ +G V+S ++ ++++ ++ ++S ++
Sbjct: 389 TTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVSSTESVTSDSSDSTTPLDVSSSPSE 448
Query: 267 KSEKDKDIP 293
+E P
Sbjct: 449 STESQSSTP 457
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = +3
Query: 87 TKMPRRGVHTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQ 266
T P + TES STT+ + + ++ +G V+S ++ ++++ ++ ++S ++
Sbjct: 389 TTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVSSTESVTSDSSDSTTPLDVSSSPSE 448
Query: 267 KSEKDKDIP 293
+E P
Sbjct: 449 STESQSSTP 457
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = +3
Query: 87 TKMPRRGVHTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQ 266
T P + TES STT+ + + ++ +G V+S ++ ++++ ++ ++S ++
Sbjct: 389 TTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVSSTESVTSDSSDSTTPLDVSSSPSE 448
Query: 267 KSEKDKDIP 293
+E P
Sbjct: 449 STESQSSTP 457
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = +3
Query: 87 TKMPRRGVHTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQ 266
T P + TES STT+ + + ++ +G V+S ++ ++++ ++ ++S ++
Sbjct: 389 TTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVSSTESVTSDSSDSTTPLDVSSSPSE 448
Query: 267 KSEKDKDIP 293
+E P
Sbjct: 449 STESQSSTP 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,144
Number of Sequences: 27780
Number of extensions: 424595
Number of successful extensions: 1488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -