Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16n08f
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.7  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 515 NSFRSYTTGHYPAHRHTRLFHIR 583
           N +++    HY +H+H R  H+R
Sbjct: 113 NQYKNQNNNHYTSHQHLRT-HLR 134


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +3

Query: 417 NFSSEDGDRTAPHEWDISRVLWQARW 494
           + S + G      EW+  R LW   W
Sbjct: 560 SISVDSGSINTVAEWEPPRALWPTEW 585


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 78  IFWTKMPRRGVHTESGPSTTADVIMLNDRNVATVSG 185
           ++W + P RGV     P  T      NDR     +G
Sbjct: 191 MYWKETPVRGVEEAELPQFTIIGYETNDRKEKLATG 226


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 177 VSGDVASIQTSQFNATEGPRDVETN 251
           + G  A I+ S  NAT+GP  V  N
Sbjct: 40  LGGYDARIRPSGENATDGPAVVRVN 64


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 177 VSGDVASIQTSQFNATEGPRDVETN 251
           + G  A I+ S  NAT+GP  V  N
Sbjct: 40  LGGYDARIRPSGENATDGPAIVRVN 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,941
Number of Sequences: 438
Number of extensions: 5275
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)