Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16n07f
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.76 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.4  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 54  KKYTPILKIVLAKINFIV*SYQNNCAVKTIVILSFRRYI 170
           ++Y  +L + L KI   V    +  +V TIV  S  RY+
Sbjct: 103 QQYPWVLGVSLCKIRAYVSEMSSYVSVLTIVAFSMERYL 141


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 337 TQNKHLRIFPHDPQSQVQQQHI 272
           TQ+ H++      QSQ QQQH+
Sbjct: 174 TQHPHMQPQQGQHQSQAQQQHL 195


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 48 FLNTAVTLKLGKTFDS 1
          F+N A+ L + KTFDS
Sbjct: 4  FVNYALELLVVKTFDS 19


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 48 FLNTAVTLKLGKTFDS 1
          F+N A+ L + KTFDS
Sbjct: 4  FVNYALELLVVKTFDS 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,979
Number of Sequences: 438
Number of extensions: 2366
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)