Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16n02f
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   5.7  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   5.7  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   9.9  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 660  M*TFINSTLILAVFFCSNN 604
            M  FI+STL L V FCS+N
Sbjct: 1200 MLNFISSTLYLKVSFCSSN 1218


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 553 RNGNIL*YKVKISLISLIIATXXXXXXXXXIDKSLH*KELVNSQIV 690
           +NG+IL YKV+ S IS +I           +DK+LH    +   IV
Sbjct: 605 KNGDILDYKVRPSFISSVI-----KYTPQQLDKALHSNRSIAKDIV 645


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 136 MHCTFEESYLIKTETILFYLHVYYSVYMY 50
           +HCT E+++ +  +    Y+  YYS  MY
Sbjct: 317 IHCTEEQTFFLMHKICEDYIPGYYSKTMY 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,940
Number of Sequences: 5004
Number of extensions: 66274
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)