Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m24f
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.63 
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.1  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    28   1.1  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.1  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   3.3  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 684 SSTGHRPRRTRPLVTKGSTSELTHRHSPLSFSPDLL 577
           ++T +  R+  PLV+  ST  +   HSP+  +P  L
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIRSHSPVLLTPQTL 312


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 330 GNII-SPLSFQMGSRSIYLIVYRV 398
           GN+I +PLS Q G R IYLI Y V
Sbjct: 94  GNLIFAPLSEQFGRRPIYLIGYSV 117


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 330 GNII-SPLSFQMGSRSIYLIVYRV 398
           GN+I +PLS Q G R IYLI Y V
Sbjct: 94  GNLIFAPLSEQFGRRPIYLIGYSV 117


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 330 GNII-SPLSFQMGSRSIYLIVYRV 398
           GN+I +PLS Q G R IYLI Y V
Sbjct: 94  GNLIFAPLSEQFGRRPIYLIGYSV 117


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
 Frame = +3

Query: 519 WP*QEQC----FPESTTGSETRPTEDPARNSVGCVCGLIHSSSPSSQADGFGED 668
           W  +E C    FP     + T+P   P ++   C C   HS      A G  ED
Sbjct: 391 WKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAKGALED 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,382
Number of Sequences: 5004
Number of extensions: 51428
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)