Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m24f
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm rece...    31   1.0  
Z81116-10|CAB03307.1|  321|Caenorhabditis elegans Hypothetical p...    30   1.8  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    29   3.1  

>AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm
           receptor protein 134 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 303 LIIVLRANAGNIISPLSFQMGSRSIYLIVYRVINI 407
           L+ +LRA AG  + P  + M + S+Y +VY  ++I
Sbjct: 23  LLYLLRAKAGKHLGPFRYLMITFSLYSVVYNYVDI 57


>Z81116-10|CAB03307.1|  321|Caenorhabditis elegans Hypothetical
           protein T06C12.11 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 303 LIIVLRANAGNIISPLSFQMGSRSIYLIVYRVINI 407
           L+ +L A AG  I P  + M S S+Y +VY  ++I
Sbjct: 23  LLYLLWAKAGKQIGPFRYLMMSFSLYSVVYNYVDI 57


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +1

Query: 274 YNH*WSSEID*LLYCALMLVTLLAHLASRWAVEVSTLLSIGSLT*QLVFFFLPMLIALRG 453
           + H WS  ++   YC +  + L A   S + ++ +    IG  +   +F+F+P  ++   
Sbjct: 154 FTHTWSLSVEVQFYCLVPFIFLFAAKLSGFKLQCAYFALIGLFS-YAIFYFIPENMSFNS 212

Query: 454 YF 459
            F
Sbjct: 213 VF 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,300
Number of Sequences: 27780
Number of extensions: 289468
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)