Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m20r
         (639 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071853-1|AAH71853.1|  356|Homo sapiens GREB1 protein protein.        31   2.6  
AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic co...    31   3.4  
AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic co...    31   3.4  
AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coi...    31   3.4  
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              30   8.0  

>BC071853-1|AAH71853.1|  356|Homo sapiens GREB1 protein protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 341 KCRELKSSALTSVTRPEKLMMSDAPGGLQEPAX--PSRRRGSXALNNSPISLNKFEITMS 514
           KC++L  + L ++ RP  L  S  PG   +PA      R G  A    P+SL + ++   
Sbjct: 275 KCQQLAKNNLLALPRPSALGSSACPGRPGDPALLWAKARGGMGAAGLGPLSLLESDVASM 334

Query: 515 RM 520
           R+
Sbjct: 335 RV 336


>AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic
            coiled-coil containing protein 2 protein.
          Length = 2948

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 53   LTAGPTSRPKRLIWRLDLTSPIXIAXPMSLTM-MLSARXTEXVASXTTFSRASPPEAKDL 229
            L+  PTS P  ++W   LT    ++ P    +  L  +  E        SR SPP A  L
Sbjct: 910  LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 969

Query: 230  R 232
            +
Sbjct: 970  K 970


>AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic
           coiled-coil containing protein 2 protein.
          Length = 2675

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 53  LTAGPTSRPKRLIWRLDLTSPIXIAXPMSLTM-MLSARXTEXVASXTTFSRASPPEAKDL 229
           L+  PTS P  ++W   LT    ++ P    +  L  +  E        SR SPP A  L
Sbjct: 637 LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 696

Query: 230 R 232
           +
Sbjct: 697 K 697


>AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coiled
            coil 2, long isoform protein.
          Length = 2948

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 53   LTAGPTSRPKRLIWRLDLTSPIXIAXPMSLTM-MLSARXTEXVASXTTFSRASPPEAKDL 229
            L+  PTS P  ++W   LT    ++ P    +  L  +  E        SR SPP A  L
Sbjct: 910  LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 969

Query: 230  R 232
            +
Sbjct: 970  K 970


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 3/144 (2%)
 Frame = +2

Query: 56   TAGPTSRPKRLIWRLDLTSPIXIAXPMSLTMMLSARXTEXVASXTTFSRASPPEAKDLRT 235
            ++ PT+           ++PI        T   S   T  ++S TT +  +P  +     
Sbjct: 744  SSAPTTNTTSAPTTSTTSAPITSTISAPTTSTTSTPQTSTISSPTTSTTPTPQTSTTSSP 803

Query: 236  RLKMRISPSAEPTDA---ETLGTARTKLSXVPT*LTRRKCRELKSSALTSVTRPEKLMMS 406
                  +P+   T A    T  T +T +S  PT  T         SA T+ T       +
Sbjct: 804  TTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAPTTSTTSFHTTST 863

Query: 407  DAPGGLQEPAXPSRRRGSXALNNS 478
             +P      + P   + S A +++
Sbjct: 864  TSPPTSSTSSTPQTSKTSAATSST 887


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,316,548
Number of Sequences: 237096
Number of extensions: 1308906
Number of successful extensions: 2890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2889
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)