Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m20r
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    24   1.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   7.6  

>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 618 IQSTMKAFIFALALACVSXV 559
           + +T +AFI++LAL C+  +
Sbjct: 2   VSNTKQAFIYSLALLCLHAI 21


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 170 EXVASXTTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 289
           E V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 164 EPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 612 STMKAFIFALALACVSXV 559
           +T +AFI++LAL C+  +
Sbjct: 4   NTKQAFIYSLALLCLHAI 21


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 176 VASXTTFSRASPPEAKDLRTRLKMRISP 259
           +   T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,214
Number of Sequences: 438
Number of extensions: 2410
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)